Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5915 ATGGATTCAACTCAACATCATCAACATGTCCCTTATGGAGTTCATCATAGGATTAACAACTCTTCATCAAGCTTAATGAATGAAGGATCTGGTTTTGATTTTGGGGAGCTAGAAGAAGCAATAGTTCTGCAAGGAGTTAAGAGTAGAAATGATGAAACAAAAGCATCTTTTTTCACAGCCAGACCTTCTGCTACACTGGAAATGTTCCCTTCTTGGCCAATGAGATTCCATCAAACCTCAATAGGAGGAAACAAATCAGGAGGGGAAAGTAGTGATTCGGCACTATCAAGCAAAAATGAGAATCCTTTTGAAGAAGAATCACCATTAAGTTGTAAAAAAGGAACTTCATTTTCATTTGATAAAAATAATAATAATCCTAATCAGATTTTCGATGAACAGAATCTTCAGCTACAACAACAGAAGATGGTAGCAAATGATGGTATAAGAACAACCTCTTCATCACAGAATCAATCAGCAGAAGCAGGGAAAGAAAAGAAAAAGGGAGGTGGTTCCACATCAGATAAGCCACTTGATGCAAAGACATTGAGACGTTTAGCACAAAACAGGGAAGCTGCAAGGAAAAGTCGTCTTAGGAAAAAGGCGTATGTTCAGCAACTAGAGTCAAGTAGATTAAAGCTTACACAATTGGAACAAGACCTTCAAAGAGCACGATCTCAGGGTATGTTCATGGATTGGAATGGTGGTGTTGGTGGCAATATTAGCTCTGGAGGTGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGATGACAACCGTTTATTAACGGAGTTAAGAAACGGATTACAAACCGCTTTAACAGAAAATGAAATGAGAGTAATGGTGGATGGGTATTTATGTCATTATGATCAAATATTTAGAGTGAAAGGAATCACTGCAAAAACAGATGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGCTTCCTTTGGATTGGTGGCTTTAGACCCTCCGAAATGATCACGATGTTGATTCAACAATTGGAACCACTAGCTGAGCAGCAAATAATGGGAATGTATGGACTGAGACATTCTACACAGCAAGCAGAGGAAGCTCTCTCTCAAGGACTTGATCAGTTGCAACAATCTCTTGTTGACACCATTGCTGGAGGACCACTTGTTGACGGTGTTCAACAAATGGTCGTCGCCATGGGCAAGCTCTCTAACCTCGAAGGATTTCTTCGTCAGGCGGATTATTTGAGGCAACAAACTCTTCACCAACTTTGTCGATTACTTACACTTCGTCAAGCTGCGCGTTCTTTTCTTGTTATCGGAGAATATTACGGTCGACTTCGAGCTCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCATGATGAGTGATGATAACTCATGCCAAACAACCACAGACATGCAAATGGTTCAACCTTCTCAGGATCATTTCTCAAGTTTCTGA 1452 0.4022 MDSTQHHQHVPYGVHHRINNSSSSLMNEGSGFDFGELEEAIVLQGVKSRNDETKASFFTARPSATLEMFPSWPMRFHQTSIGGNKSGGESSDSALSSKNENPFEEESPLSCKKGTSFSFDKNNNNPNQIFDEQNLQLQQQKMVANDGIRTTSSSQNQSAEAGKEKKKGGGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGMFMDWNGGVGGNISSGGAMFDMEYGRWLEDDNRLLTELRNGLQTALTENEMRVMVDGYLCHYDQIFRVKGITAKTDVFHLINGMWTSQAERCFLWIGGFRPSEMITMLIQQLEPLAEQQIMGMYGLRHSTQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAMGKLSNLEGFLRQADYLRQQTLHQLCRLLTLRQAARSFLVIGEYYGRLRALSSLWASRPRETMMSDDNSCQTTTDMQMVQPSQDHFSSF* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5915 483 MobiDBLite consensus disorder prediction 145 181 - -
Psa5g5915 483 SUPERFAMILY Leucine zipper domain 180 222 IPR046347 GO:0003700|GO:0006355
Psa5g5915 483 MobiDBLite consensus disorder prediction 84 110 - -
Psa5g5915 483 CDD bZIP_HBP1b-like 180 230 - -
Psa5g5915 483 PANTHER TRANSCRIPTION FACTOR TGA9 54 462 - -
Psa5g5915 483 PANTHER TRANSCRIPTION FACTOR TGA9 54 462 - -
Psa5g5915 483 MobiDBLite consensus disorder prediction 145 159 - -
Psa5g5915 483 MobiDBLite consensus disorder prediction 160 181 - -
Psa5g5915 483 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 183 198 IPR004827 GO:0003700|GO:0006355
Psa5g5915 483 SMART brlzneu 176 242 IPR004827 GO:0003700|GO:0006355
Psa5g5915 483 Pfam bZIP transcription factor 179 221 IPR004827 GO:0003700|GO:0006355
Psa5g5915 483 ProSiteProfiles DOG1 domain profile. 244 452 IPR025422 GO:0006351|GO:0043565
Psa5g5915 483 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 178 222 IPR004827 GO:0003700|GO:0006355
Psa5g5915 483 Pfam Seed dormancy control 262 336 IPR025422 GO:0006351|GO:0043565
Psa5g5915 483 Gene3D - 179 228 - -
Psa5g5915 483 Coils Coil 199 226 - -
Psa5g5915 483 MobiDBLite consensus disorder prediction 84 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5915 Psa-Chr5 510965893 510970797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5915 135 483 bZIP Transcription Factor Family AT1G08320 66.189 2.32e-174 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Psa5g5915 DOG1 8.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5915 K14431 - gmx:100775461 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5915 5 510965893 510970797 Psa5g5915 5 510965893 510970797 ECH