Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5909 ATGGGTTTGAGAGATCAATACAATATTGTAGAAGACAAAAATCTACACCTTCAAACCCCAACTTTCATTGAATATCTCAAACCATCTTCATCACTCTCATCATCTCCTTCATCTTCCTTAACTCATCACCACAAATTATCTAAAGAAACTTTTCAGTTTTTGCCCTTAAAAGAAGATCATGAGATGCAAAAGGAAGGTTTTGAAGTCAAAGAAGCAATTAAACAAGTGACTGTGACTTTGCACATAGGATTACCTAACATAGGAAGTGAAAATGATGATCATGATGAGAAGAATAAGGTTTTTGATCATGTTAAGGAAGAACAAGAACAAGAGTTGGAGAAAAACATACATGGCTTTTGTTTTAAGGAGGAAAAAAGGTTTTGGATACCAACTCCTGCTCAGATCCTTGTTGGACCTATGCAGTTTGCTTGTTCCATATGTAGTAAGACTTTCAATAGATACAACAATATGCAGATGCATATGTGGGGACATGGATCAGAATTTAGGAAAGGACCAGATTCACTTAAAGGAACACAACCAGCAGCAATGTTAAGGTTACCATGTTATTGTTGTGCTAATGGTTGCAAAAACAATATAAATCATCCAAGAGCAAAACCATTGAAGGATTTCCGAACTCTCCAAACTCATTACAAGAGAAAACATGGAACAAAACCATTTAAATGTAGAAAATGTTCTAAAGCATTTGCTGTTAAAGGAGATTGGAGAACTCATGAGAAAAACTGTGGAAAGTTTTGGTATTGCACTTGTGGTTCCGATTTTAAACACAAAAGATCTCTTAAAGATCATGTTAGATCCTTTGGGAAAGGTCACTCCCCTCATCCTTCTCTTGAAGGGTTTGAAGATGAGAAACAATGCAGCAATACCGGGTCCGTTGATGATGAAGTTGTTCATACATGA 918 0.3606 MGLRDQYNIVEDKNLHLQTPTFIEYLKPSSSLSSSPSSSLTHHHKLSKETFQFLPLKEDHEMQKEGFEVKEAIKQVTVTLHIGLPNIGSENDDHDEKNKVFDHVKEEQEQELEKNIHGFCFKEEKRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCANGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFKCRKCSKAFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHVRSFGKGHSPHPSLEGFEDEKQCSNTGSVDDEVVHT* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5909 305 SMART c2h2final6 226 246 IPR013087 -
Psa5g5909 305 SMART c2h2final6 142 164 IPR013087 -
Psa5g5909 305 SUPERFAMILY beta-beta-alpha zinc fingers 212 246 IPR036236 -
Psa5g5909 305 PANTHER ZINC FINGER PROTEIN WIP2 45 303 IPR043584 GO:0003700|GO:0010468
Psa5g5909 305 PANTHER ZINC FINGER PROTEIN WIP2 1 49 IPR043584 GO:0003700|GO:0010468
Psa5g5909 305 SUPERFAMILY beta-beta-alpha zinc fingers 120 165 IPR036236 -
Psa5g5909 305 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Psa5g5909 305 MobiDBLite consensus disorder prediction 288 305 - -
Psa5g5909 305 MobiDBLite consensus disorder prediction 272 287 - -
Psa5g5909 305 Gene3D Classic Zinc Finger 222 282 - -
Psa5g5909 305 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 49 - -
Psa5g5909 305 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 45 303 - -
Psa5g5909 305 MobiDBLite consensus disorder prediction 272 305 - -
Psa5g5909 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Psa5g5909 305 Gene3D Classic Zinc Finger 141 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5909 Psa-Chr5 510124836 510127299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5909 8 295 C2H2 Transcription Factor Family AT1G08290 57.988 1.88e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g5909 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5909 - - gmx:100819306 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5909 5 510124836 510127299 Psa5g5909 5 510124836 510127299 ECH