Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5906 ATGGCGGAAGAACACAGATGCCAAGCGCCGCGATTATGCGTCAACAATTGTGGATTCTTTGGCAGCACCGCCACGGAGAATCTTTGTTCAAGGTGCTATCGAGATTTGCAGCTTAAGGAACAACAAGCTTCATCGGCGAAGCTTGTTCTCAATCAATCAATCGCGGTGCCGGCGAAGGCGGCGTTGGTTTCTGAACCGTCAGCTTCTTCGCCGGAGCCGGTTGATTTGCCTAGCGTTGTTGAAGAGGCGAAGGCGAAACCGCTGCAGCAGAATCGGTGCATGACGTGTAAGAAGCGCGTGGGGCTCACCGGGTTTAAGTGCAAGTGCGGGATGATGCTGTGTGGGACCCACCGTTACCCAGAGCAGCACGGTTGTGAGTTTGATTTCAAGGGGTTGGGGAGAGAGCAGATCGCGAAGGCGAACCCGGTGGTGAAGGGTGAGAAACTCGAGAAGATCTGA 459 0.5447 MAEEHRCQAPRLCVNNCGFFGSTATENLCSRCYRDLQLKEQQASSAKLVLNQSIAVPAKAALVSEPSASSPEPVDLPSVVEEAKAKPLQQNRCMTCKKRVGLTGFKCKCGMMLCGTHRYPEQHGCEFDFKGLGREQIAKANPVVKGEKLEKI* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5906 152 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Psa5g5906 152 SMART AN1_Zf_4 93 130 IPR000058 GO:0008270
Psa5g5906 152 Gene3D - 1 56 - -
Psa5g5906 152 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Psa5g5906 152 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Psa5g5906 152 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 56 - -
Psa5g5906 152 SUPERFAMILY AN1-like Zinc finger 80 147 IPR035896 -
Psa5g5906 152 Pfam AN1-like Zinc finger 93 129 IPR000058 GO:0008270
Psa5g5906 152 Gene3D - 66 148 IPR035896 -
Psa5g5906 152 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 152 - -
Psa5g5906 152 ProSiteProfiles Zinc finger AN1-type profile. 87 133 IPR000058 GO:0008270
Psa5g5906 152 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5906 Psa-Chr5 509970738 509972229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5906 1 152 C2H2 Transcription Factor Family AT3G52800 50.289 8.39e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5906 - - gmx:106795660 239.195