Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5905 ATGTATAGCAATTTCAAGGAACAGGCGATAGAGTACGTGAAACAAGCCGTTCACGAAGATAATGCTGGTAACTACGCGAAAGCGTTTCCTTTATATATGAACGCTTTGGAGTATTTCAAGACTCATTTGAAGTACGAGAAGAACCCTAAAATCAGAGAAGCTATTACGCAGAAATTCACTGAGTATTTGCGTCGTGCTGAGGAGATCAGGGCTGTGCTTGATGATGGTGGGCCTGGTCCAGCTTCTAATGGCGATGCTGCTGTTGCTACGAGGCCCAAGAGTAAGGCTAAGGATGGTGGTAAAGATGGTGAAGGTGGAGGGGATGGAGAAGATCCGGAGCAGGCGAAGCTTAGGGCTGGATTGAATTCGGCGATTATTAGGGAGAAACCTAATGTGAAGTGGAATGATGTTGCTGGGTTGGAGAGTGCTAAACAGGCTTTGCAGGAAGCTGTTATCTTGCCTGTCAAGTTCCCTCAATTTTTTACTGGTAAAAGACGACCATGGAGAGCATTTTTGTTGTACGGACCTCCTGGAACTGGTAAATCATATTTAGCCAAGGCAGTTGCAACTGAGGCTGATTCAACATTTTTCAGTATTTCTTCATCAGATCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAATTGGTTTCAAACCTTTTCCAAATGGCACGAGAAAGTGCCCCCTCTATCATATTTATTGATGAAATAGATTCCCTATGTGGCCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATCAAAACAGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGACCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGTATATATATTCCACTACCAGAATTGAAGGCTCGCCAACACATGTTCAAGGTGCATCTTGGAGATACTCCTCATAATTTGACTGAAAGTGATTTTGAGTATTTGGGTAGCAGGACAGGGGGATTTTCAGGTTCAGATATAGCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCTATGTTCTTCTTTAAGAGTCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGGGCGCAGTTCAAACTACAATGCAGGATCTTGCCACAAAAGGACTTGCTTCTAAGATTCTTCCACCTCCTATCACGAGAACTGATTTTGAAAAGGTTCTGGCAAGACAAAGGCCTACAGTAAGCAAAAGTGACCTTGAGGTTCATGAGAGATTCACAAAGGAGTTTGGAGAAGAAGGTTAA 1317 0.4336 MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKSKAKDGGKDGEGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPELKARQHMFKVHLGDTPHNLTESDFEYLGSRTGGFSGSDIAVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAVQTTMQDLATKGLASKILPPPITRTDFEKVLARQRPTVSKSDLEVHERFTKEFGEEG* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5905 438 Pfam ATPase family associated with various cellular activities (AAA) 172 301 IPR003959 GO:0005524|GO:0016887
Psa5g5905 438 SMART smart 2 79 IPR007330 -
Psa5g5905 438 CDD AAA 138 301 - -
Psa5g5905 438 Pfam Vps4 C terminal oligomerisation domain 371 435 IPR015415 -
Psa5g5905 438 ProSitePatterns AAA-protein family signature. 273 292 IPR003960 GO:0005524|GO:0016887
Psa5g5905 438 PANTHER AAA DOMAIN-CONTAINING 1 438 - -
Psa5g5905 438 SUPERFAMILY MIT domain 2 81 IPR036181 -
Psa5g5905 438 MobiDBLite consensus disorder prediction 73 113 - -
Psa5g5905 438 Gene3D - 303 418 - -
Psa5g5905 438 Gene3D - 6 75 - -
Psa5g5905 438 Gene3D - 130 426 IPR027417 -
Psa5g5905 438 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Psa5g5905 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 434 IPR027417 -
Psa5g5905 438 MobiDBLite consensus disorder prediction 91 113 - -
Psa5g5905 438 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 438 - -
Psa5g5905 438 SMART AAA_5 167 303 IPR003593 -
Psa5g5905 438 CDD MIT_VPS4 4 77 IPR045253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5905 Psa-Chr5 509914832 509919817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5905 166 359 Calmodulin-binding Proteins AT3G56690 35.714 6.58e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5905 K12196 - gmx:100788150 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5905 5 509914832 509919817 Psa5g5905 5 509914832 509919817 ECH
Psa5g5905 5 509914832 509919817 Psa7g4331 7 352156126 352163586 ECH
Psa5g5905 5 509914832 509919817 Psa7g4331 7 352156126 352163586 PCT