Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5890 ATGAAGGTTATCGCCGCTTATTTGTTGGCCGTATTGGGAGGCAACACATCCCCTTCAGCCGCTGATATTAAGAAGATTCTCGGATCAGTTGGAGTTGAGGCTGAGGACTCAAATATTGAGTTGCTCCTAAGTGAAGTGAAAGGCAAAGATTTTGCTGAGCTTATTGCCAGTGGAAGAGAAAAGTTGGCTTCAGTTCCATCTGGTGGTGGTGGTGGTGCCGTTGCTCTTTCTGCTGCTTCTGGAGGAGGTGCTGCAGCTGCTGCCCCTGCTGCTGAAGCTAAGGAGGAGAAGAAGGTGGAAGAGAAGGAAGAATCCGATGATGACATGGGATTCAGCTTATTTGACTAA 348 0.4828 MKVIAAYLLAVLGGNTSPSAADIKKILGSVGVEAEDSNIELLLSEVKGKDFAELIASGREKLASVPSGGGGGAVALSAASGGGAAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5890 115 MobiDBLite consensus disorder prediction 91 105 - -
Psa5g5890 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 115 - -
Psa5g5890 115 Pfam 60s Acidic ribosomal protein 17 114 - -
Psa5g5890 115 Gene3D - 1 59 IPR038716 -
Psa5g5890 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
Psa5g5890 115 MobiDBLite consensus disorder prediction 87 115 - -
Psa5g5890 115 Hamap 50S ribosomal protein L12 [rpl12]. 2 115 IPR027534 GO:0003735|GO:0005840|GO:0006414
Psa5g5890 115 CDD Ribosomal_P2 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5890 Psa-Chr5 508407558 508409795 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5890 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 81.429 6.74e-34 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5890 K02943 - ming:122089001 124.405