Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5880 ATGAGATTGGAGAAATGCTGGTTTTGTTCTTCAACTGTATACCCTGGACATGGAATCCAATTTGTTCGCAATGATGCAAAGATTTTTCGGTTTTGTAGATCAAAATGCCACAAGAACTTTAAAATGAAGAGGAATCCTCGTAAAGTAAAATGGACCAAGGCATATAGGCGCGTGCATGGGAAGGATATGACACAGGATTCAACCTTTGAGTTTGAGAGAAAGCGAAACAGGCCTGAGAGATATGACAGGAATCTCGCTGATAGCGTACTCAAGGCCATTCCTAAGATTGATAAAATCAGAGTTAGCAGGGAGGAGAGACACCATAAGAACAGGATGAAAGGCAACAAGGCGAAAGTGCAGAGGGAGGCAGAGAAGGAGTACGAGCAGAGCATCCATATGGTCAAAGCTCCTTCCGCATTACAACAGGAGAAGATCAAAGTCAAGGTTTCCCAACAACAATCAGAAGAGAATCCTCTCATGGAAGAGTGA 489 0.4315 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLADSVLKAIPKIDKIRVSREERHHKNRMKGNKAKVQREAEKEYEQSIHMVKAPSALQQEKIKVKVSQQQSEENPLMEE* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5880 162 MobiDBLite consensus disorder prediction 105 162 - -
Psa5g5880 162 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Psa5g5880 162 MobiDBLite consensus disorder prediction 116 131 - -
Psa5g5880 162 PANTHER BNAA04G10330D PROTEIN 1 162 - -
Psa5g5880 162 SMART 4TRASH 6 44 IPR011017 -
Psa5g5880 162 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
Psa5g5880 162 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Psa5g5880 162 PANTHER 60S RIBOSOMAL PROTEIN L24 1 162 IPR000988 -
Psa5g5880 162 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Psa5g5880 162 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
Psa5g5880 162 Coils Coil 109 129 - -
Psa5g5880 162 MobiDBLite consensus disorder prediction 144 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5880 Psa-Chr5 507472070 507475901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5880 1 162 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 70.988 1.52e-83 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5880 K02896 - gmx:100306000 297.36