Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5871 ATGAAGCTTCCGCCAGAAACCAAAGCGATGGAGCCACCACCGGTTCCAAAGCGGCGGGGTCGACCGCCGAAACAGAGAAGAACAGAGAATGGAAAGGTAACCGATGTTCCGAAGAAGCCTAAGCCAATTGTATTGATTGGAAGGTACGTTTTGAAGCAGTTTCCGAAACGCGCTCGAATTGGAAAAGTTGTAAGCTATAAAATTGGTTTATATAGGGTCGAGTTTGAAAACCGTGTTTCTGAGGATTTGGATAGTGGTGTTATTCGGAAAATTCTTTTGGAGGATTGTGATTTGGATTTGGATGATGGTTTGATTAAAAGGAAGAAGAAATTGGATGGATTGTTGTCGCGTAAGATTGATGAGGCAAAGAAGAAGAAGAAGTCGTCTGAATTGCGAGAGGAGAATGACAAGGAACAAGATGTAATGGGAGAAGTAACGGACGATTCCATGGATTTATGTTCAAAGGCTGAAACTCGGCTTGAATCGCCAATGTTAGACTTGCCGCCGAAGTTGGAATTACCGCCGTCTTCTCGAACTATTGGTGTGCCGGAGAATTATGTTTCACACCTGTTTTCAGTTTATGCATTTCTAAGATCATTCAGCATTAGATTGTTTCTGAGTCCTTTTACTTTGGATGACTTCGTTGGTGCTCTTAACTGTCGTGTCTCGAATACTTTGCTTGATGCTGTTCATGTTTCTTTGTTGCGTGCTTTGAAACGTCATCTGGAAAGTCTTTCAGCTGAGGGCTCCAAGATTGCATCAAAATGCCTTAGGTACAGTGATTGGAGCTTGCTTGATGCATTGACTTGGCCTGTTTTCTTAATTCAATATGTAACAGTTAATGGATACACTAAGGGGTCTGAGTGGAAAGGATTTTATAATGAGATTTTATGTGGCGAGTATTATTCATTGCCTGCAAGTAGGAAGTTAATGATATTGCAAATTCTATGTGAAGAGGTTTTGGAGTCTGAGGAGCTAAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTCGGGAAGAATTATGATGCTGAGGACATTCCTCATGCAGAAAATGAACCGAAAGGAGTCCATCGACGACATGCCAAAACTGCTGATTGCCAGGATGAAGAATCTCTGAAGTCTGTTTCAAAATTAGATGCTGTGAACTTACCTGGTAATTCTGAGGACGAGGTTGACAATAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCCGCTGTTTATCATTCAAGGTGTATTGGTGTGATGAAGATGTATATACCAGAAGGGGAATGGTATTGTCCAGAGTGTAAAATAAATATGACCGGGCCAACAATTGCACGGGGAACATCTCTTAAAGGGGCTGAAATATTTGGAATGGATTTGTACGGGCAACTATTCATGGGTACTTGCGACCACCTACTTGTGCTTAATGACAGCAGCAGTGAATTTTGTCTTAAATACTACAATCAGATTGACATTCCTGAAGTTATCCGAGTGCTTTATGCTTCCATGCAACATAGACATGTATACTCCAGTATTTGCACAGCGGTGTTACAATATTGGAATATTTCAGAAAGCTTCTTACTCCCATGTGTTCCAAACGGAGTACATATAAACTCAGAATATTCAAAGATAGATGAAGACACCTCTGCTGCATTACTTCCTCATGTGGTTGAAAATGACCATAAAGATGTTAGTTTTGGTAAACCAGAATACAGTCTAGCATCTGTTGATGGGATTTGCAGTGATAATATGGTCCCATCTCTTGATGCTTCGTTGGTCACCAGTAGTCCCACTCGTGAAACCAGTGACAATACTATAACTAAGGAGTCCCCTAGCACGAATATGAAACTTCAGAAGGAAACTGTGATGAGTTCTGGTGTTTTTACTGTTAACCACCAGTCTGACACAAATTGCCAAAATCCTGATAACAGATCAAATGCGGCTATTCTTGCCAAGTGCTCCTCGGTAAGCAACCAATTTATTACTTATGGGCATGCAAATGACATGGGATTGCCTATGAATTTGTCTTTGCAAACTAAAGGTGATCAAACTGGTTTTGGAAAGGGCAAAGGAAATATAACTAATGATTTTGTATATATGGGTTGCTCCTATAAACCTCAGTCATACATTAATTACTATATGCATGGTGATTTTGCTGCATCTGCTGCTGCTAACTTGGCCATTCTTTCTTCAGTGGATTCTAGATCAGAAGGTCACGTGACTGACTTGAGGAGAGCTACATCTGAAAACACTAACTTGTTAGAAAAAGCATTCTCATTAACAGTTTCATGCTTCGTTTGGCCAAGTTCTGACAAGAAGCTTGCGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCCTGCTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTATATGTGCTACCCAAAGTGCCGTGAGAATCTTTTCGGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATTGGCCCTACCATTGCAACATATGTCATATATATGGAGGAAAGCTTACATGGTTTAATAGACGGGCCCTTTCTTAGTGGAAACTATAGAAAGCAATGGCGTGAACACATGGAAAGGGCCACATCATTTAATAGCATAAAGCCCCTTTTACTTAAACTTGAAGAGAACATTCGCTCAATTGCTTTTTGTGGCGAATGGTTGAAGCTGACTGATGAGTGGTTGGTTGAATCTCTTACAATACAAAGTGCTACATCTATTCTTGGAACAACAGAGACCCGTGCATCATGCGATAGATGTAGAAAACAACCTATCAAATATGCAGCTGGCCCTTGCCGTGAGAACTTTGGCTGGCGGAATAGCAAATTTACCAAATCTGTGTTTCAGAAAGCTGCATTGCCAAAATACATGGTCAGAAGAGCAGCTAGGCAAGGTGGTTCAAAGAAAATTTTGAGTATTATCTATCCTGATTCTGGTGTCTCTGAAATTCCTAAGAGAAGCCGACAGCTGATTTGGAGAGCTGCCGTTCAAATGAGTAGGAGTGCATCACAACTTGCACTTCAGGTCCGTTATCTGGATTTGCATATCAGATGGATTGATCTGATTCGGCCAGAGTATAACCTCCAGGATGGAAAAGTTCAAGATACTGAAGTTTCTGCTCTTAGAAATGCAAATATTTGCGACAAAAAGCGAGAAGAGGGAAAAACATCATATGATATAGATTTTGGGAGCAAAAAGCATATTCCTTCTCGGGTATTGAAGAATGCTAAAATTGTTCAAGGGCCAAAAGGAGAGAAGTACTGGTTTTCCGAAACACGCATTCCTTTATATTTGATAAAAGAGTATGAAGTAAGCAATGAAAAAAAGCTATCATATGAAGATAACTTGAATATTGCATCTCAATGGCACAAAAAGCGGTTGAATGCTATCTTCATGGACATATTTTCTTACCTCACTCACAAGAGAGACAATTTAGACATGCCATCATGTTCTGTATGTAAGCAGGGTGTTTTATTTAGGAATGCTCTCAAGTGCAGCGCATGTCTAGGTTATTGTCATGAGGGCTGTTCAATAATTCCAGCTTTCCCGATGTATACAGACGCTGAGTTCTTGACCACATGCAAACAATGTTATCACACCAGATTACTTACTCAAAAAGAGATTAATAACAAATCTCCAACCAGTCCCTTATCGTTAAAAGGACATGAACACAGCTCCTTGACAATTTTGAAGGGACTAAAGCCTAAATGTGATAATCAAATACTGTTATCTACCAGGGCAGAGGATTGTCGATCTGACATTGAAAAAGTTGCTTCGTATTCCTCTATGGAAGCAAAAAGCAGTCGCAGAAAATCTTGGGGTATTATATGGAAAAAGAATAACAGTGAAGATACAGGCCTTGATTTCAGGCTAAAAAAGATAATTCTGAAGCGGCGTACAAGCTTGCCTCAATTGGAACCTGTTTGTCACTTGTGCCAAATGCCATATAGGCCTGATCTAATGTATATCGGCTGTGAAACATGTACCAGGTGGTATCATGCTGAAGCTCTTGAACTTGAAGAGTCCAAAATATTTTCTGTGCTTGGCTTCAAATGTTGCAAGTGTCGCAAGATAAAGTCACCTGCATGTCCTTACTCACAGGCTTCCAAGAAAAAAGATCCTGGAGCAGATTCTGGTTCTGGAACACTAGCTGACACAAGAGCAAGTGAGCCTGATACACCGATCTTTCCTGCAGAGGAGGTTTGTAAACGCAGAACACTAGCTGACGCAAGAGCAAGTGAGCCTGATACGCCGATCTTTCCTGCAGAGGAGGTTTCTAAACGCAGAACACTAGCTGACGCAAGAGCAAGTGAGCCTGATACGCCGATCTTTCTTGCAGAGGAGGTTTCTAAACGCAGAACACTAGCTGACGCAAGAGCAAGTGGGCTTGATACCCCAATCTTTCCTGCAGAGGAGGTTTCTAAAAAAGAGAACAATCCTCTGTCATTTTCTCTTTCAAATGTCGAACTGATTGCAGAACCCAACTTTGAGGTAGATGCAGGAATTGAATCTAACCTCGTCTCTGGGTCAGTCCTTCAGAAAATGCCAACAAGAAGCCATTTTAAACCTGAGGGGGACAGTAATGGCTCTTTTGGAGGTCAAATTCCACATGCTGGAATTTCGGATGAAATGGATAATCTGCCTGCAGAAGTTTTCCCACCTTTTGTAGAACAGGACTCTCTCTCTGCTCACTACAATTTTCTGAATTACTCTGAAATTGAAGCCAATGAATACACTGAGTTTGAAACCGAGTCTGAACTTATGGACATAGACTTTGAGGAAGCTTATGCACCTGGTGACTTGTCAGGAATTGCCGATTCTTGTACACTAGATGTTCCTGAAGAACTTGCATCTACTAGTTTAAATAACAACCAGGGACCTACAATTTCATCAAATCGAAATGTTCATAGTTGTGCAGAATGTTCACAAACGGAACCAGCCCCAGATCTCAATTGTGAGGATTGTCCGATGAGGATTCACAAAAAGTGTTCACGCTGGATTGAATCATCATCTATGCTTGAAGAAGAATGGAAGTGTGGTAATTGCAGGAATTGGTCGTAG 5091 0.4129 MKLPPETKAMEPPPVPKRRGRPPKQRRTENGKVTDVPKKPKPIVLIGRYVLKQFPKRARIGKVVSYKIGLYRVEFENRVSEDLDSGVIRKILLEDCDLDLDDGLIKRKKKLDGLLSRKIDEAKKKKKSSELREENDKEQDVMGEVTDDSMDLCSKAETRLESPMLDLPPKLELPPSSRTIGVPENYVSHLFSVYAFLRSFSIRLFLSPFTLDDFVGALNCRVSNTLLDAVHVSLLRALKRHLESLSAEGSKIASKCLRYSDWSLLDALTWPVFLIQYVTVNGYTKGSEWKGFYNEILCGEYYSLPASRKLMILQILCEEVLESEELKAEMNMREESEVGKNYDAEDIPHAENEPKGVHRRHAKTADCQDEESLKSVSKLDAVNLPGNSEDEVDNNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMYIPEGEWYCPECKINMTGPTIARGTSLKGAEIFGMDLYGQLFMGTCDHLLVLNDSSSEFCLKYYNQIDIPEVIRVLYASMQHRHVYSSICTAVLQYWNISESFLLPCVPNGVHINSEYSKIDEDTSAALLPHVVENDHKDVSFGKPEYSLASVDGICSDNMVPSLDASLVTSSPTRETSDNTITKESPSTNMKLQKETVMSSGVFTVNHQSDTNCQNPDNRSNAAILAKCSSVSNQFITYGHANDMGLPMNLSLQTKGDQTGFGKGKGNITNDFVYMGCSYKPQSYINYYMHGDFAASAAANLAILSSVDSRSEGHVTDLRRATSENTNLLEKAFSLTVSCFVWPSSDKKLAEVPRERCGWCLSCKAPASSKKGCMLNHAAICATQSAVRIFSGLAPVRSGEGIGPTIATYVIYMEESLHGLIDGPFLSGNYRKQWREHMERATSFNSIKPLLLKLEENIRSIAFCGEWLKLTDEWLVESLTIQSATSILGTTETRASCDRCRKQPIKYAAGPCRENFGWRNSKFTKSVFQKAALPKYMVRRAARQGGSKKILSIIYPDSGVSEIPKRSRQLIWRAAVQMSRSASQLALQVRYLDLHIRWIDLIRPEYNLQDGKVQDTEVSALRNANICDKKREEGKTSYDIDFGSKKHIPSRVLKNAKIVQGPKGEKYWFSETRIPLYLIKEYEVSNEKKLSYEDNLNIASQWHKKRLNAIFMDIFSYLTHKRDNLDMPSCSVCKQGVLFRNALKCSACLGYCHEGCSIIPAFPMYTDAEFLTTCKQCYHTRLLTQKEINNKSPTSPLSLKGHEHSSLTILKGLKPKCDNQILLSTRAEDCRSDIEKVASYSSMEAKSSRRKSWGIIWKKNNSEDTGLDFRLKKIILKRRTSLPQLEPVCHLCQMPYRPDLMYIGCETCTRWYHAEALELEESKIFSVLGFKCCKCRKIKSPACPYSQASKKKDPGADSGSGTLADTRASEPDTPIFPAEEVCKRRTLADARASEPDTPIFPAEEVSKRRTLADARASEPDTPIFLAEEVSKRRTLADARASGLDTPIFPAEEVSKKENNPLSFSLSNVELIAEPNFEVDAGIESNLVSGSVLQKMPTRSHFKPEGDSNGSFGGQIPHAGISDEMDNLPAEVFPPFVEQDSLSAHYNFLNYSEIEANEYTEFETESELMDIDFEEAYAPGDLSGIADSCTLDVPEELASTSLNNNQGPTISSNRNVHSCAECSQTEPAPDLNCEDCPMRIHKKCSRWIESSSMLEEEWKCGNCRNWS* 1697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5871 1696 MobiDBLite consensus disorder prediction 125 144 - -
Psa5g5871 1696 CDD PHD_SF 1318 1365 - -
Psa5g5871 1696 MobiDBLite consensus disorder prediction 1 37 - -
Psa5g5871 1696 MobiDBLite consensus disorder prediction 1376 1400 - -
Psa5g5871 1696 CDD PHD2_CHD_II 399 440 - -
Psa5g5871 1696 SUPERFAMILY FYVE/PHD zinc finger 384 446 IPR011011 -
Psa5g5871 1696 Pfam DDT domain 186 240 IPR018501 -
Psa5g5871 1696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 448 IPR013083 -
Psa5g5871 1696 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 15 1693 - -
Psa5g5871 1696 Coils Coil 119 139 - -
Psa5g5871 1696 CDD PHD_SF 1647 1692 - -
Psa5g5871 1696 ProSiteProfiles Zinc finger PHD-type profile. 396 443 IPR019787 -
Psa5g5871 1696 SMART PHD_3 1159 1208 IPR001965 -
Psa5g5871 1696 SMART PHD_3 1318 1366 IPR001965 -
Psa5g5871 1696 SMART PHD_3 398 441 IPR001965 -
Psa5g5871 1696 SMART PHD_3 1647 1693 IPR001965 -
Psa5g5871 1696 ProSitePatterns Zinc finger PHD-type signature. 399 440 IPR019786 -
Psa5g5871 1696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1308 1383 IPR013083 -
Psa5g5871 1696 ProSiteProfiles DDT domain profile. 184 244 IPR018501 -
Psa5g5871 1696 PANTHER PHD FINGER FAMILY PROTEIN 15 1693 - -
Psa5g5871 1696 SMART testlast3 184 244 IPR018501 -
Psa5g5871 1696 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 289 331 IPR028942 -
Psa5g5871 1696 Pfam PHD-finger 399 441 IPR019787 -
Psa5g5871 1696 SUPERFAMILY FYVE/PHD zinc finger 1316 1371 IPR011011 -
Psa5g5871 1696 MobiDBLite consensus disorder prediction 337 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5871 Psa-Chr5 507231971 507240167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5871 274 527 EF-hand Containing Proteins AT5G22760 45.985 1.61e-67 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Psa5g5871 DDT 6.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5871 - - gmx:100808614 1823.52