Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa5g5871 | ATGAAGCTTCCGCCAGAAACCAAAGCGATGGAGCCACCACCGGTTCCAAAGCGGCGGGGTCGACCGCCGAAACAGAGAAGAACAGAGAATGGAAAGGTAACCGATGTTCCGAAGAAGCCTAAGCCAATTGTATTGATTGGAAGGTACGTTTTGAAGCAGTTTCCGAAACGCGCTCGAATTGGAAAAGTTGTAAGCTATAAAATTGGTTTATATAGGGTCGAGTTTGAAAACCGTGTTTCTGAGGATTTGGATAGTGGTGTTATTCGGAAAATTCTTTTGGAGGATTGTGATTTGGATTTGGATGATGGTTTGATTAAAAGGAAGAAGAAATTGGATGGATTGTTGTCGCGTAAGATTGATGAGGCAAAGAAGAAGAAGAAGTCGTCTGAATTGCGAGAGGAGAATGACAAGGAACAAGATGTAATGGGAGAAGTAACGGACGATTCCATGGATTTATGTTCAAAGGCTGAAACTCGGCTTGAATCGCCAATGTTAGACTTGCCGCCGAAGTTGGAATTACCGCCGTCTTCTCGAACTATTGGTGTGCCGGAGAATTATGTTTCACACCTGTTTTCAGTTTATGCATTTCTAAGATCATTCAGCATTAGATTGTTTCTGAGTCCTTTTACTTTGGATGACTTCGTTGGTGCTCTTAACTGTCGTGTCTCGAATACTTTGCTTGATGCTGTTCATGTTTCTTTGTTGCGTGCTTTGAAACGTCATCTGGAAAGTCTTTCAGCTGAGGGCTCCAAGATTGCATCAAAATGCCTTAGGTACAGTGATTGGAGCTTGCTTGATGCATTGACTTGGCCTGTTTTCTTAATTCAATATGTAACAGTTAATGGATACACTAAGGGGTCTGAGTGGAAAGGATTTTATAATGAGATTTTATGTGGCGAGTATTATTCATTGCCTGCAAGTAGGAAGTTAATGATATTGCAAATTCTATGTGAAGAGGTTTTGGAGTCTGAGGAGCTAAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTCGGGAAGAATTATGATGCTGAGGACATTCCTCATGCAGAAAATGAACCGAAAGGAGTCCATCGACGACATGCCAAAACTGCTGATTGCCAGGATGAAGAATCTCTGAAGTCTGTTTCAAAATTAGATGCTGTGAACTTACCTGGTAATTCTGAGGACGAGGTTGACAATAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCCGCTGTTTATCATTCAAGGTGTATTGGTGTGATGAAGATGTATATACCAGAAGGGGAATGGTATTGTCCAGAGTGTAAAATAAATATGACCGGGCCAACAATTGCACGGGGAACATCTCTTAAAGGGGCTGAAATATTTGGAATGGATTTGTACGGGCAACTATTCATGGGTACTTGCGACCACCTACTTGTGCTTAATGACAGCAGCAGTGAATTTTGTCTTAAATACTACAATCAGATTGACATTCCTGAAGTTATCCGAGTGCTTTATGCTTCCATGCAACATAGACATGTATACTCCAGTATTTGCACAGCGGTGTTACAATATTGGAATATTTCAGAAAGCTTCTTACTCCCATGTGTTCCAAACGGAGTACATATAAACTCAGAATATTCAAAGATAGATGAAGACACCTCTGCTGCATTACTTCCTCATGTGGTTGAAAATGACCATAAAGATGTTAGTTTTGGTAAACCAGAATACAGTCTAGCATCTGTTGATGGGATTTGCAGTGATAATATGGTCCCATCTCTTGATGCTTCGTTGGTCACCAGTAGTCCCACTCGTGAAACCAGTGACAATACTATAACTAAGGAGTCCCCTAGCACGAATATGAAACTTCAGAAGGAAACTGTGATGAGTTCTGGTGTTTTTACTGTTAACCACCAGTCTGACACAAATTGCCAAAATCCTGATAACAGATCAAATGCGGCTATTCTTGCCAAGTGCTCCTCGGTAAGCAACCAATTTATTACTTATGGGCATGCAAATGACATGGGATTGCCTATGAATTTGTCTTTGCAAACTAAAGGTGATCAAACTGGTTTTGGAAAGGGCAAAGGAAATATAACTAATGATTTTGTATATATGGGTTGCTCCTATAAACCTCAGTCATACATTAATTACTATATGCATGGTGATTTTGCTGCATCTGCTGCTGCTAACTTGGCCATTCTTTCTTCAGTGGATTCTAGATCAGAAGGTCACGTGACTGACTTGAGGAGAGCTACATCTGAAAACACTAACTTGTTAGAAAAAGCATTCTCATTAACAGTTTCATGCTTCGTTTGGCCAAGTTCTGACAAGAAGCTTGCGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCCTGCTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTATATGTGCTACCCAAAGTGCCGTGAGAATCTTTTCGGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATTGGCCCTACCATTGCAACATATGTCATATATATGGAGGAAAGCTTACATGGTTTAATAGACGGGCCCTTTCTTAGTGGAAACTATAGAAAGCAATGGCGTGAACACATGGAAAGGGCCACATCATTTAATAGCATAAAGCCCCTTTTACTTAAACTTGAAGAGAACATTCGCTCAATTGCTTTTTGTGGCGAATGGTTGAAGCTGACTGATGAGTGGTTGGTTGAATCTCTTACAATACAAAGTGCTACATCTATTCTTGGAACAACAGAGACCCGTGCATCATGCGATAGATGTAGAAAACAACCTATCAAATATGCAGCTGGCCCTTGCCGTGAGAACTTTGGCTGGCGGAATAGCAAATTTACCAAATCTGTGTTTCAGAAAGCTGCATTGCCAAAATACATGGTCAGAAGAGCAGCTAGGCAAGGTGGTTCAAAGAAAATTTTGAGTATTATCTATCCTGATTCTGGTGTCTCTGAAATTCCTAAGAGAAGCCGACAGCTGATTTGGAGAGCTGCCGTTCAAATGAGTAGGAGTGCATCACAACTTGCACTTCAGGTCCGTTATCTGGATTTGCATATCAGATGGATTGATCTGATTCGGCCAGAGTATAACCTCCAGGATGGAAAAGTTCAAGATACTGAAGTTTCTGCTCTTAGAAATGCAAATATTTGCGACAAAAAGCGAGAAGAGGGAAAAACATCATATGATATAGATTTTGGGAGCAAAAAGCATATTCCTTCTCGGGTATTGAAGAATGCTAAAATTGTTCAAGGGCCAAAAGGAGAGAAGTACTGGTTTTCCGAAACACGCATTCCTTTATATTTGATAAAAGAGTATGAAGTAAGCAATGAAAAAAAGCTATCATATGAAGATAACTTGAATATTGCATCTCAATGGCACAAAAAGCGGTTGAATGCTATCTTCATGGACATATTTTCTTACCTCACTCACAAGAGAGACAATTTAGACATGCCATCATGTTCTGTATGTAAGCAGGGTGTTTTATTTAGGAATGCTCTCAAGTGCAGCGCATGTCTAGGTTATTGTCATGAGGGCTGTTCAATAATTCCAGCTTTCCCGATGTATACAGACGCTGAGTTCTTGACCACATGCAAACAATGTTATCACACCAGATTACTTACTCAAAAAGAGATTAATAACAAATCTCCAACCAGTCCCTTATCGTTAAAAGGACATGAACACAGCTCCTTGACAATTTTGAAGGGACTAAAGCCTAAATGTGATAATCAAATACTGTTATCTACCAGGGCAGAGGATTGTCGATCTGACATTGAAAAAGTTGCTTCGTATTCCTCTATGGAAGCAAAAAGCAGTCGCAGAAAATCTTGGGGTATTATATGGAAAAAGAATAACAGTGAAGATACAGGCCTTGATTTCAGGCTAAAAAAGATAATTCTGAAGCGGCGTACAAGCTTGCCTCAATTGGAACCTGTTTGTCACTTGTGCCAAATGCCATATAGGCCTGATCTAATGTATATCGGCTGTGAAACATGTACCAGGTGGTATCATGCTGAAGCTCTTGAACTTGAAGAGTCCAAAATATTTTCTGTGCTTGGCTTCAAATGTTGCAAGTGTCGCAAGATAAAGTCACCTGCATGTCCTTACTCACAGGCTTCCAAGAAAAAAGATCCTGGAGCAGATTCTGGTTCTGGAACACTAGCTGACACAAGAGCAAGTGAGCCTGATACACCGATCTTTCCTGCAGAGGAGGTTTGTAAACGCAGAACACTAGCTGACGCAAGAGCAAGTGAGCCTGATACGCCGATCTTTCCTGCAGAGGAGGTTTCTAAACGCAGAACACTAGCTGACGCAAGAGCAAGTGAGCCTGATACGCCGATCTTTCTTGCAGAGGAGGTTTCTAAACGCAGAACACTAGCTGACGCAAGAGCAAGTGGGCTTGATACCCCAATCTTTCCTGCAGAGGAGGTTTCTAAAAAAGAGAACAATCCTCTGTCATTTTCTCTTTCAAATGTCGAACTGATTGCAGAACCCAACTTTGAGGTAGATGCAGGAATTGAATCTAACCTCGTCTCTGGGTCAGTCCTTCAGAAAATGCCAACAAGAAGCCATTTTAAACCTGAGGGGGACAGTAATGGCTCTTTTGGAGGTCAAATTCCACATGCTGGAATTTCGGATGAAATGGATAATCTGCCTGCAGAAGTTTTCCCACCTTTTGTAGAACAGGACTCTCTCTCTGCTCACTACAATTTTCTGAATTACTCTGAAATTGAAGCCAATGAATACACTGAGTTTGAAACCGAGTCTGAACTTATGGACATAGACTTTGAGGAAGCTTATGCACCTGGTGACTTGTCAGGAATTGCCGATTCTTGTACACTAGATGTTCCTGAAGAACTTGCATCTACTAGTTTAAATAACAACCAGGGACCTACAATTTCATCAAATCGAAATGTTCATAGTTGTGCAGAATGTTCACAAACGGAACCAGCCCCAGATCTCAATTGTGAGGATTGTCCGATGAGGATTCACAAAAAGTGTTCACGCTGGATTGAATCATCATCTATGCTTGAAGAAGAATGGAAGTGTGGTAATTGCAGGAATTGGTCGTAG | 5091 | 0.4129 | MKLPPETKAMEPPPVPKRRGRPPKQRRTENGKVTDVPKKPKPIVLIGRYVLKQFPKRARIGKVVSYKIGLYRVEFENRVSEDLDSGVIRKILLEDCDLDLDDGLIKRKKKLDGLLSRKIDEAKKKKKSSELREENDKEQDVMGEVTDDSMDLCSKAETRLESPMLDLPPKLELPPSSRTIGVPENYVSHLFSVYAFLRSFSIRLFLSPFTLDDFVGALNCRVSNTLLDAVHVSLLRALKRHLESLSAEGSKIASKCLRYSDWSLLDALTWPVFLIQYVTVNGYTKGSEWKGFYNEILCGEYYSLPASRKLMILQILCEEVLESEELKAEMNMREESEVGKNYDAEDIPHAENEPKGVHRRHAKTADCQDEESLKSVSKLDAVNLPGNSEDEVDNNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMYIPEGEWYCPECKINMTGPTIARGTSLKGAEIFGMDLYGQLFMGTCDHLLVLNDSSSEFCLKYYNQIDIPEVIRVLYASMQHRHVYSSICTAVLQYWNISESFLLPCVPNGVHINSEYSKIDEDTSAALLPHVVENDHKDVSFGKPEYSLASVDGICSDNMVPSLDASLVTSSPTRETSDNTITKESPSTNMKLQKETVMSSGVFTVNHQSDTNCQNPDNRSNAAILAKCSSVSNQFITYGHANDMGLPMNLSLQTKGDQTGFGKGKGNITNDFVYMGCSYKPQSYINYYMHGDFAASAAANLAILSSVDSRSEGHVTDLRRATSENTNLLEKAFSLTVSCFVWPSSDKKLAEVPRERCGWCLSCKAPASSKKGCMLNHAAICATQSAVRIFSGLAPVRSGEGIGPTIATYVIYMEESLHGLIDGPFLSGNYRKQWREHMERATSFNSIKPLLLKLEENIRSIAFCGEWLKLTDEWLVESLTIQSATSILGTTETRASCDRCRKQPIKYAAGPCRENFGWRNSKFTKSVFQKAALPKYMVRRAARQGGSKKILSIIYPDSGVSEIPKRSRQLIWRAAVQMSRSASQLALQVRYLDLHIRWIDLIRPEYNLQDGKVQDTEVSALRNANICDKKREEGKTSYDIDFGSKKHIPSRVLKNAKIVQGPKGEKYWFSETRIPLYLIKEYEVSNEKKLSYEDNLNIASQWHKKRLNAIFMDIFSYLTHKRDNLDMPSCSVCKQGVLFRNALKCSACLGYCHEGCSIIPAFPMYTDAEFLTTCKQCYHTRLLTQKEINNKSPTSPLSLKGHEHSSLTILKGLKPKCDNQILLSTRAEDCRSDIEKVASYSSMEAKSSRRKSWGIIWKKNNSEDTGLDFRLKKIILKRRTSLPQLEPVCHLCQMPYRPDLMYIGCETCTRWYHAEALELEESKIFSVLGFKCCKCRKIKSPACPYSQASKKKDPGADSGSGTLADTRASEPDTPIFPAEEVCKRRTLADARASEPDTPIFPAEEVSKRRTLADARASEPDTPIFLAEEVSKRRTLADARASGLDTPIFPAEEVSKKENNPLSFSLSNVELIAEPNFEVDAGIESNLVSGSVLQKMPTRSHFKPEGDSNGSFGGQIPHAGISDEMDNLPAEVFPPFVEQDSLSAHYNFLNYSEIEANEYTEFETESELMDIDFEEAYAPGDLSGIADSCTLDVPEELASTSLNNNQGPTISSNRNVHSCAECSQTEPAPDLNCEDCPMRIHKKCSRWIESSSMLEEEWKCGNCRNWS* | 1697 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa5g5871 | 1696 | MobiDBLite | consensus disorder prediction | 125 | 144 | - | - | |
Psa5g5871 | 1696 | CDD | PHD_SF | 1318 | 1365 | - | - | |
Psa5g5871 | 1696 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Psa5g5871 | 1696 | MobiDBLite | consensus disorder prediction | 1376 | 1400 | - | - | |
Psa5g5871 | 1696 | CDD | PHD2_CHD_II | 399 | 440 | - | - | |
Psa5g5871 | 1696 | SUPERFAMILY | FYVE/PHD zinc finger | 384 | 446 | IPR011011 | - | |
Psa5g5871 | 1696 | Pfam | DDT domain | 186 | 240 | IPR018501 | - | |
Psa5g5871 | 1696 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 381 | 448 | IPR013083 | - | |
Psa5g5871 | 1696 | PANTHER | DNA-BINDING AND ZINC-FINGER PROTEIN | 15 | 1693 | - | - | |
Psa5g5871 | 1696 | Coils | Coil | 119 | 139 | - | - | |
Psa5g5871 | 1696 | CDD | PHD_SF | 1647 | 1692 | - | - | |
Psa5g5871 | 1696 | ProSiteProfiles | Zinc finger PHD-type profile. | 396 | 443 | IPR019787 | - | |
Psa5g5871 | 1696 | SMART | PHD_3 | 1159 | 1208 | IPR001965 | - | |
Psa5g5871 | 1696 | SMART | PHD_3 | 1318 | 1366 | IPR001965 | - | |
Psa5g5871 | 1696 | SMART | PHD_3 | 398 | 441 | IPR001965 | - | |
Psa5g5871 | 1696 | SMART | PHD_3 | 1647 | 1693 | IPR001965 | - | |
Psa5g5871 | 1696 | ProSitePatterns | Zinc finger PHD-type signature. | 399 | 440 | IPR019786 | - | |
Psa5g5871 | 1696 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1308 | 1383 | IPR013083 | - | |
Psa5g5871 | 1696 | ProSiteProfiles | DDT domain profile. | 184 | 244 | IPR018501 | - | |
Psa5g5871 | 1696 | PANTHER | PHD FINGER FAMILY PROTEIN | 15 | 1693 | - | - | |
Psa5g5871 | 1696 | SMART | testlast3 | 184 | 244 | IPR018501 | - | |
Psa5g5871 | 1696 | Pfam | WSTF, HB1, Itc1p, MBD9 motif 1 | 289 | 331 | IPR028942 | - | |
Psa5g5871 | 1696 | Pfam | PHD-finger | 399 | 441 | IPR019787 | - | |
Psa5g5871 | 1696 | SUPERFAMILY | FYVE/PHD zinc finger | 1316 | 1371 | IPR011011 | - | |
Psa5g5871 | 1696 | MobiDBLite | consensus disorder prediction | 337 | 371 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa5g5871 | Psa-Chr5 | 507231971 | 507240167 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa5g5871 | 274 | 527 | EF-hand Containing Proteins | AT5G22760 | 45.985 | 1.61e-67 | 249 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | DDT | Psa5g5871 | DDT | 6.1e-14 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa5g5871 | - | - | gmx:100808614 | 1823.52 |