Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5853 ATGGAAAAGAAACTCCACAAGATAGACTCAACCCCTGGTGGAAAACTCACCCCTCATGTGATTGAGTTGAATGCTCGCCAGGACGTGGTAGAGGTTCTATACAATATATCTGTGGAAAATCGTCGTAAAACTGTTATCATACTTTCTGCATCGGGTTCTGTATCAGACATTGTGAGTCTTACTCCAGACGGTCCCATCCACATCAAGGGAGAATTTGAGATACATTTAATGTCGATAAAAAGTCTGGTTGATGGTGCTGGTCGTCACTGTCGTGCAAAGGCAACATGTATGGTTACATGCATAGATGATAAGGGAAAACCGTTTGGAAATGCTTCTGTCAATTCTCTCATAGTGGCCAAGCGTGTTAAAATTACTGCGGCCTTATTCAACACAAACACTGCTAAGAAAACAGGTGCAAGAATTGCAGAGATTGCTCGAAATGAGGAAAAGATTCCCATAGCAGCCATCCCTCTTCAAATGATTGGGGCCAACATTGATCCCAACAACTCCATCAAAGAAGAAGCTTGTACGTCTGAAATTTTGCCAACAACTCCATCAGTGGGAGATGGAAACATAAGAAATCCGACATCAGCAACAACTAGTACTTCAAATGATCAGGACATGAAATCTCCTTCTGGAGGGGACACTTGA 651 0.4255 MEKKLHKIDSTPGGKLTPHVIELNARQDVVEVLYNISVENRRKTVIILSASGSVSDIVSLTPDGPIHIKGEFEIHLMSIKSLVDGAGRHCRAKATCMVTCIDDKGKPFGNASVNSLIVAKRVKITAALFNTNTAKKTGARIAEIARNEEKIPIAAIPLQMIGANIDPNNSIKEEACTSEILPTTPSVGDGNIRNPTSATTSTSNDQDMKSPSGGDT* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5853 216 MobiDBLite consensus disorder prediction 182 216 - -
Psa5g5853 216 ProSiteProfiles PPC domain profile profile. 10 154 IPR005175 -
Psa5g5853 216 SUPERFAMILY AF0104/ALDC/Ptd012-like 15 136 - -
Psa5g5853 216 Gene3D - 18 150 - -
Psa5g5853 216 Pfam Plants and Prokaryotes Conserved (PCC) domain 18 130 IPR005175 -
Psa5g5853 216 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 4 193 IPR039605 GO:0003680
Psa5g5853 216 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 4 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5853 Psa-Chr5 506038961 506040317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5853 13 129 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 28.926 1.30e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5853 - - mtr:MTR_2g084675 127.487