Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5852 ATGATCGGTACTTCTGCTACCGATCATCAAGAAGAAGATGGTGATGATAGACTGCCGCAATTGCCATTGGATTCTTCATTCTTGAATCAACTTCACATCAAAGAAGAACCTTCTGAAATTGAAACTGAAAGTTCTTCCAAGAAAAGAAAATTGTTAGGTGGTGATGCAGCAATGAATAATTCTTCAACATTTCCAGTGCCAGTGCCATTGCCATTGCCATTGGATTCTTCTCCCAACCTAACACCAAAGAAGAGAAAAGAGGGACCTTCTCTAACAACTTCTTCTGAAACTCCAACCAAGAGGAGAAGAGGACGCCCTCCTGGTTCAAAGAATAGAAAAGAAGGACCTTCTCTAACAACTTCAGAAGCAACATCTGCAGAAACTCCAACAAAGAGAAGACCCGACCGCCCTTTTGGTCCCCGTGGTGGAAAACTCACCCCTCATGTGATTGAGTTGAATGCTCGCCAGGATGTGGTAGAGGTTCTATACAATATATCTGTGGCAAATCGTTGTAAAACTGTTATCATACTTTCTGCATCCGGTTTTGTATCAGACATTGTGAATCTTACTCCAGACGGTCCCATCCACATCAAGGGAGAATTTGAGATACATTTAATGTCGATAAAAAGTCTGGTTGATGGTGCTGGTCGTCACTGTCGTGAAAAGGCAACATGTATGGTTACATGCATAGATGATAAGGGAAATCCATTTGGAAATGCTTCTGTCAATTCTCTCATAGTGGCCAGGCGTGTTAAAATTACTGCGGCCTTATTCAACACAAACACTGCTAAGAAAACAGGTGCAAGAATTGCAGAGATTGCTCGAAATGATGAAAAAAATCCCATAGCAGCGTCCCTTCTTCAAATGATTGGGGCCAACATTGATCCCAACAGCTCCATCAAAGAAGAAGCTTGTACGTCTGAAATTTTGCCAACAACTCCATCAGTGGGAGATGGAAACATAAGAAATCCGACATCAGCAACAATTAGTACTTCAAATGATCAGGACATGAAATCTCCTTCTGGAGGGGACACTTGA 1038 0.42 MIGTSATDHQEEDGDDRLPQLPLDSSFLNQLHIKEEPSEIETESSSKKRKLLGGDAAMNNSSTFPVPVPLPLPLDSSPNLTPKKRKEGPSLTTSSETPTKRRRGRPPGSKNRKEGPSLTTSEATSAETPTKRRPDRPFGPRGGKLTPHVIELNARQDVVEVLYNISVANRCKTVIILSASGFVSDIVNLTPDGPIHIKGEFEIHLMSIKSLVDGAGRHCREKATCMVTCIDDKGNPFGNASVNSLIVARRVKITAALFNTNTAKKTGARIAEIARNDEKNPIAASLLQMIGANIDPNSSIKEEACTSEILPTTPSVGDGNIRNPTSATISTSNDQDMKSPSGGDT* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5852 345 MobiDBLite consensus disorder prediction 113 127 - -
Psa5g5852 345 MobiDBLite consensus disorder prediction 34 50 - -
Psa5g5852 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 259 IPR005175 -
Psa5g5852 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 85 297 IPR039605 GO:0003680
Psa5g5852 345 MobiDBLite consensus disorder prediction 313 345 - -
Psa5g5852 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 85 297 - -
Psa5g5852 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 145 265 - -
Psa5g5852 345 MobiDBLite consensus disorder prediction 1 144 - -
Psa5g5852 345 Gene3D - 147 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5852 Psa-Chr5 506005945 506007411 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5852 87 305 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 24.898 1.62e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5852 - - mtr:MTR_2g084675 130.183