Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5850 ATGGAAGATGGTGATGATAGACTGCCGCAATTGCCATTGGGTTCTTCATTCTTGAATCAACTTCACATCAAAGAAGAACCTTTTGAAACTGAAACTTCTTTCAAGAAAAGAAAATTGTTAGGTGGTGATGCAGCAATGAATAATTCTTCAACATTTCCAGTGCCATTGCCATTGGATTCTTCTCCCAACCTGACACCAAAGAAGAGAAAAGAGGGACCTTCTCTAACAACTTCTTCTGAAACTCCAACCAAGATGAGAAGAGGACGCCCTCCTGGTTCCGGTTCAAAGAATAGAAAAGAAGGACCTTCTCCAACAACTTCAGAAACAACTTCTGCAGAAACTCCAACTAAGAAGAGAAGACCCGGACGCCCTCCTGGTTACAGATCAAAGAATAGAAAAGAAGGACCTTCTTGGACAATTTCAGAAACAACTTCAGCAGAAACTCCAACGAAGAGAAGACGTCCAAAGTTCGACTCTCATATTATAGAGTTGAATGCCGGTCAGGATGTGATAGAGGTTCTATACAATATGTCTGTGGCAAATCCTAGTAAAACTGTTACCATACTTTCTGCTTCCGGTCCTGTATCAGACATTGTCGATCTTACCCCGAACGGTCCCACTCACTCCAAGGGAAAATTTGAGATATATTTTATGGCTATAAAATGTGTCGCTGATGATGATGGTCGTCATTGTCGTGAAAAGGCAACTTTTATGGTTGGATGCAAAGATGAAAAGGGAAATCTGTTTGTAAATAATTTTGTCAATTCCCTCATAGCGGCTGGCGATGTTAAAATTACTGCAACCTTATTCAACACAGACGCCGCTAAGAAAGCAGGTGCAAGAATTTCGGCGATTGAGGCCAATATTGATCCAGCTACAGAATATTGCAGAAAGGTTGTGAAAGAAGAAGGTTCTGCGTCTGGATTTTTGCCAACAACGCCCCCATCTGTTGCAGATGGAAACATGATAATTCTCACATCAGCAACAACTAGTGCTTCCAATGATCATGACATGGAGTCTCCTTCTGTAGGGGACAATTGTCAGGATATGAAATCTCCTTCTGTTTGA 1068 0.4148 MEDGDDRLPQLPLGSSFLNQLHIKEEPFETETSFKKRKLLGGDAAMNNSSTFPVPLPLDSSPNLTPKKRKEGPSLTTSSETPTKMRRGRPPGSGSKNRKEGPSPTTSETTSAETPTKKRRPGRPPGYRSKNRKEGPSWTISETTSAETPTKRRRPKFDSHIIELNAGQDVIEVLYNMSVANPSKTVTILSASGPVSDIVDLTPNGPTHSKGKFEIYFMAIKCVADDDGRHCREKATFMVGCKDEKGNLFVNNFVNSLIAAGDVKITATLFNTDAAKKAGARISAIEANIDPATEYCRKVVKEEGSASGFLPTTPPSVADGNMIILTSATTSASNDHDMESPSVGDNCQDMKSPSV* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5850 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 110 326 IPR039605 GO:0003680
Psa5g5850 355 MobiDBLite consensus disorder prediction 46 154 - -
Psa5g5850 355 MobiDBLite consensus disorder prediction 329 355 - -
Psa5g5850 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 159 271 IPR005175 -
Psa5g5850 355 MobiDBLite consensus disorder prediction 98 112 - -
Psa5g5850 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 110 326 - -
Psa5g5850 355 MobiDBLite consensus disorder prediction 70 84 - -
Psa5g5850 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 156 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5850 Psa-Chr5 505948174 505949505 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5850 18 271 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 24.903 1.38e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5850 - - mtr:MTR_2g084675 136.732