Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5847 ATGGAGTTCTGGGGTGCTGAGGTTAAGGTTGGTGAATCTGTCAAAGTTGATCCACAAGAATTTGAAGCTTGCATTCACCTTTCACAGGCTGCACTTGGTGAATCTAAGAAAGATAAAGCTAATGAGCCTGTTGTTATTTACTTGAAAGTTGGTGACCAGAAGCTTGTTTTGGGAACCCTCAACAGAGAGAAAATTCCTCAGACTACTCTTGAGTTGGTTCTGGACAAGGAATTTGAGCTTTCTCACAGCTCTAAAACATCCAGTGTCCATTTCTGTGGATACAAAGCTTATTACCCTGACAATGAATATAGTGATGAAGATGACTATTCTGATAGCGATGAGGAGGAAATTCCTTTGGCTCAACCCATAGAGAATGGGAAACCAGAAATAAAGGTTGAGAATCAGAAAGTTTCTGAAGCTAAGAAAGCACCTGCTAAGAGTGGTGTACCTGCCAAGCCTGAACCACCTGCTAAGAGTGGTACATCTGCAAAACAAGTGAAGGTTGTTGATCCAAAGGAGGAAAAAGATGATGATTCTGATGATGAATCAGATGATGAACTTGATAGCTCTGATGAAGAGTTGGATGATGCTGATAGTGAAGATGAGGATGAGAGTGATGAAGAAGATGAAGAGACTCCTGTGAAGAAGGTGGACAAGGGGAAGAAGAGGGCCAATGAGTCTGCTTCCAAAACCCCAGTTCCTTCCAAGAAATCAAAAAATGCCACTCCTGAGAAGACTGATGGTAAGAAAGCTGGGCATACAGCAACCCCTCACCCCAAGAAAGCTGGAAAGACTCCAAACAGTGATGCCAAATCTCCCAAGTCTGGAGGACATCTCTCCTGCAGTAGCTGCAGCAAGACATTCAACTCTGAAACAGGATTAACTCAGCACACCAAAGCAAAGCATGGTGCTCAGTAA 918 0.4325 MEFWGAEVKVGESVKVDPQEFEACIHLSQAALGESKKDKANEPVVIYLKVGDQKLVLGTLNREKIPQTTLELVLDKEFELSHSSKTSSVHFCGYKAYYPDNEYSDEDDYSDSDEEEIPLAQPIENGKPEIKVENQKVSEAKKAPAKSGVPAKPEPPAKSGTSAKQVKVVDPKEEKDDDSDDESDDELDSSDEELDDADSEDEDESDEEDEETPVKKVDKGKKRANESASKTPVPSKKSKNATPEKTDGKKAGHTATPHPKKAGKTPNSDAKSPKSGGHLSCSSCSKTFNSETGLTQHTKAKHGAQ* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5847 305 MobiDBLite consensus disorder prediction 175 211 - -
Psa5g5847 305 ProSitePatterns Zinc finger C2H2 type domain signature. 281 302 IPR013087 -
Psa5g5847 305 MobiDBLite consensus disorder prediction 212 226 - -
Psa5g5847 305 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 301 - -
Psa5g5847 305 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Psa5g5847 305 Gene3D Nucleoplasmin core domain 1 101 - -
Psa5g5847 305 MobiDBLite consensus disorder prediction 240 254 - -
Psa5g5847 305 MobiDBLite consensus disorder prediction 104 283 - -
Psa5g5847 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 305 IPR013087 -
Psa5g5847 305 MobiDBLite consensus disorder prediction 104 118 - -
Psa5g5847 305 MobiDBLite consensus disorder prediction 268 283 - -
Psa5g5847 305 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5847 Psa-Chr5 505897923 505901047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5847 1 304 C2H2 Transcription Factor Family AT5G03740 36.937 7.85e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g5847 NPL 1.6e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5847 - - gmx:100795506 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5847 5 505897923 505901047 Psa5g5847 5 505897923 505901047 ECH