Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5837 ATGGCGGAGGACCACAAAGATGCGAGTGATTACAGTTCGGAGGATGAAGGAACTGAAGATTACAGACGTGGTGGATATCACGCGGTTCAGATTGGCGATACTTTCAAAAATGGGTGCTATGTGGTTCAGAGCAAGCTTGGTTGGGGGCATTTTTCCACTGTTTGGCTCGCTTGGGATACTCACAAATTGCGATATGTTGCCTTAAAAATTCAAAAGAGTGCTCAACACTACACTGAAGCGGCAATGGATGAAATAAAGATTCTCAAACAAATTGCTGAAGGGGATGTAGAGGATAAGAAATGTGTTGTGAAGCTTTTGGACCACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTCACACTTATCAAGTATAGTGATTATCGAGGTGTTCCCCTTCCCATGGTTAAACAAATTTGTTATCATGTTTTGGTTGGTTTGGATTATTTGCATCGTGAGCTCTCTATAATACACACTGATTTGAAGCCCGAGAATGTCTTGATTCTCTCTCCAATAGATCCATCTAAGGATCCTAGAAAATCTGGAGTCCCACTTATCCTTCCAAAAACCAAAGACAGGACTGTGTCCAAGCATGGGACGACAAATGATAAAAGTTCGAATGGAGATCTAACCAAGAATCAGAAAAAGAAAATGCGCAAAAAGGCTAAAAAAGCAGCTCAGAAGGAAGGTCCCGAGGTAGCAGAGGAGGATTCTGAAGCACCTGAGCAAGATAGGTGTAGTAATGATGTGAAATCAAATGTCGAAAACGGCGAAGGTAAACCTAATAGTCCTGCAAGTTTAGATGAATCCGCAAAGACTTCTGAAATTCAGGATGTTCCACAAGGAAGTCAAGTTTCTAGGAGAGGTAGCCGCTCTACCAGAAAAAAGTTGCTTGCTGCTGTTGATCTCAAGTGCAAGCTGGTGGATTTCGGTAATGCTTGTTGGACGTATAAACAATTTACGAATGATATTCAGACAAGGCAGTATAGATGTCCTGAGGTTCTTCTTGGTTCCAAATACTCGACTCCAGCTGATATGTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACCGGTGATGTTCTTTTCGATCCTCACAGTGGTGATAACTATGACAGGGATGAGGACCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCACTTAGCGGCCGCTATTCCAGAGACTTTTTCAACAGATATGGCGATTTGAGACACATTCGTCGGTTGCGGTTCTGGCCTATCACTAAGGTGTTGACAGAGAAATATGATTTCAGTGAGCAAGATGCAAGTGACATGGCTGACTTCCTAGTTCCGTTACTCGACTTTGTTCCTGAAAAGAGGCCAACGGCTGCTCAGTGCCTCAATCATCCATGGATGAGTGCAGGTCCTCGGACTCTTGAGCCATCTTTGACTAATGTGCAACCTGATGCTATTAACGGAGAAAAGTCTCTAAAGTCTAGGGAAAAGACCGAGCATGAGGCTGTTGAAGTTGGTATGGGGAATATGGCGATTGATGGAACTCAAAAGTCACTCAAAGATTTTCAGCCCACAAAGTCATTGGAGTAG 1617 0.4335 MAEDHKDASDYSSEDEGTEDYRRGGYHAVQIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTHKLRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDVEDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKQICYHVLVGLDYLHRELSIIHTDLKPENVLILSPIDPSKDPRKSGVPLILPKTKDRTVSKHGTTNDKSSNGDLTKNQKKKMRKKAKKAAQKEGPEVAEEDSEAPEQDRCSNDVKSNVENGEGKPNSPASLDESAKTSEIQDVPQGSQVSRRGSRSTRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADMWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALSGRYSRDFFNRYGDLRHIRRLRFWPITKVLTEKYDFSEQDASDMADFLVPLLDFVPEKRPTAAQCLNHPWMSAGPRTLEPSLTNVQPDAINGEKSLKSREKTEHEAVEVGMGNMAIDGTQKSLKDFQPTKSLE* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5837 538 SMART serkin_6 40 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5837 538 Pfam Protein kinase domain 313 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5837 538 Pfam Protein kinase domain 40 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5837 538 MobiDBLite consensus disorder prediction 189 304 - -
Psa5g5837 538 CDD STKc_SRPK 29 476 - -
Psa5g5837 538 Gene3D Transferase(Phosphotransferase) domain 1 123 477 - -
Psa5g5837 538 PANTHER SERINE KINASE-LIKE PROTEIN 8 536 - -
Psa5g5837 538 ProSiteProfiles Protein kinase domain profile. 40 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5837 538 MobiDBLite consensus disorder prediction 236 262 - -
Psa5g5837 538 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 536 - -
Psa5g5837 538 SUPERFAMILY Protein kinase-like (PK-like) 35 485 IPR011009 -
Psa5g5837 538 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Psa5g5837 538 MobiDBLite consensus disorder prediction 277 299 - -
Psa5g5837 538 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Psa5g5837 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5837 Psa-Chr5 505362624 505366709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5837 7 526 EF-hand Containing Proteins AT5G22840 70.566 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Psa5g5837 Pkinase 9.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5837 K08832 - gmx:100791829 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5837 5 505362624 505366709 Psa5g5837 5 505362624 505366709 ECH