Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5829 ATGAACTCAAATATGAAAGATCAAGATCAACAAGACTCACTAGTTTACGCAGACAATTTTGAGTTGCATGATTTCATTGAGGATCCAAACTTTGATCAATTTATAGATTTAATTAGAGGTGAGAATGAAGATGGAATGTGTAACTTTGGTTCTGACCTTATCAATGATCGTTTCATTGATAATCATCAACCTCTTTCCATTCCTCTAATTCCATTACTTGATCACAACAACAACAATATTAATAATATTGTGAATGTCTATGATCCAAGCTCTTCAACAATTGGCTCGTTTGCTTGTTATGATGAGGAGGTTAAGGGAGAAGGAGAAAATGATTGTGATGATTCTCCGGCAACAACAACCACGACCTCGATTGACGATGCCAAATCTAGGGCTAAAACCGATCGGTCCAAAACTCTCGTTTCGGAGAGGAGGAGGAGAGGTCGAATGAAGGATAAGCTTTATGCATTGCGATCTTTAGTTCCCAACATTACAAAGATGGATAAGGCCTCTATAATTGGAGATGCAGTATCATATGTGCATGATCTTCAAGCACAATCTAGGAAGTTGAAGGCTGAGGTTTCAGGACTTGAAGTCTCTTTATCTGTGTCTGAAAACTATCAAGGATCAATTAACAACACCATTAATGTTATTCAAAGCCACCCCATTTGCAAGAAAATTATCCAGGTTGAGATGTTTCAAGTGGAGGAAAGAGGTTACTATGCAAAAATAGTATGCAATAAAGGAGAAGGAGTTGCTGCTTCATTGTACAAAGCTCTTGAGTCTCTTGCAAATTTCAATGTTCAAAATTCAAACTTAGCCACCGTTTGTGACACTTTTCTTCTTACTTTTACATTGAATGTAAAAGGTTCTGAACAAGAAATGAATCTTCAGAATTTGAAGCTATGGGTGGCAGGAGCTCTTTTGAACCAAGGCTTTGAATTCTTGCCATCCTTTTGA 957 0.373 MNSNMKDQDQQDSLVYADNFELHDFIEDPNFDQFIDLIRGENEDGMCNFGSDLINDRFIDNHQPLSIPLIPLLDHNNNNINNIVNVYDPSSSTIGSFACYDEEVKGEGENDCDDSPATTTTTSIDDAKSRAKTDRSKTLVSERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQSRKLKAEVSGLEVSLSVSENYQGSINNTINVIQSHPICKKIIQVEMFQVEERGYYAKIVCNKGEGVAASLYKALESLANFNVQNSNLATVCDTFLLTFTLNVKGSEQEMNLQNLKLWVAGALLNQGFEFLPSF* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5829 318 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 16 315 - -
Psa5g5829 318 Gene3D - 124 198 IPR036638 GO:0046983
Psa5g5829 318 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 315 - -
Psa5g5829 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 209 IPR036638 GO:0046983
Psa5g5829 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Psa5g5829 318 SMART finulus 139 188 IPR011598 GO:0046983
Psa5g5829 318 Coils Coil 179 199 - -
Psa5g5829 318 Pfam Helix-loop-helix DNA-binding domain 141 183 IPR011598 GO:0046983
Psa5g5829 318 MobiDBLite consensus disorder prediction 107 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5829 Psa-Chr5 504833505 504835497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5829 19 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 50.641 2.06e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g5829 HLH 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5829 - - gmx:100805451 422.935