Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5824 ATGGTCATTGAAGATATGATGCCATTGCCAAACTCCATGGAAGGAATTTCTGGATCATCTCTACCCTCCAATTCTCTCCTCTTGAATCTCTCTATTCTCAAAGAAAAGTTCAACCAAGTGCAAACTCTTGTAGGTGTTATTCTCTCCTCAAATCATCAAGACTCATCAACTATGGTCATATCCAACATGAACTCAACAATACAAGAAATGATAGTAACTGCCACATCAATCATGTTCACTTGTCAACACATGGCTCTTAGTTTTCCTCAAGGTACTACTTCTAATGCATGCACAAACCTAGAATTGCAAAAGCCTCAATCTAATATTCATTCAAACTTTGGCAACAATAACACAAACCTAGATCTTAGAGGTCAAAGTCAAAGCTTATTTTTTAATAATGAGTTAGAACCATTGGATTGGTTTAGTGAAAGCTATAATAGTGTTAGTAACACTAATTATAGACTCAAGGATGATATTGATGATCAAAGAGTTGATCATGAAATTAGTGAAACCATTAATAATAGTATAAAAGAGTCTAATGAAGCTAATAACCGTGATCACGATAATACGAGCTTAAAATTTGAACTGTCTTATACTTGGGTGGATCCGTTATGTGACGATGAGATAGTTGAATTGGACGCATCAGATTTATTAGCTAAGTATACGCATTATTGTCAAGTTTGTGGTAAAGGGTTTAAGAGGGATGCAAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGAGTAGTGCAGCATTGAGCAATCCAATTAACAAGAATAAAGATTCTTTGATGAGTATAAAAAACAAGAAATATTCATGTCCTCAAGAAGGGTGTAGATGGAATCAAAAGCATCTCAAGTTTCAACCATTGAAGTCATTGATTTGTGCTAAGAATCATTACAAGAGAAGCCATTGTCCCAAAATGTATGTGTGCAAGAGGTGTAATCAGAAGAACTTCTCAGTTCTTTCTGATTTGAGGACTCATGAGAAACATTGTGGTGATCTTAGGTGGCAGTGCTCATGTGGCACTACTTTTTCTAGGAAAGACAAGCTTATGGGACATGTTGGTTTGTTTGTAGGACACCACCCTGTTATCAATGGTTTGTCATATAATACTCACACAAATTAA 1137 0.358 MVIEDMMPLPNSMEGISGSSLPSNSLLLNLSILKEKFNQVQTLVGVILSSNHQDSSTMVISNMNSTIQEMIVTATSIMFTCQHMALSFPQGTTSNACTNLELQKPQSNIHSNFGNNNTNLDLRGQSQSLFFNNELEPLDWFSESYNSVSNTNYRLKDDIDDQRVDHEISETINNSIKESNEANNRDHDNTSLKFELSYTWVDPLCDDEIVELDASDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSSAALSNPINKNKDSLMSIKNKKYSCPQEGCRWNQKHLKFQPLKSLICAKNHYKRSHCPKMYVCKRCNQKNFSVLSDLRTHEKHCGDLRWQCSCGTTFSRKDKLMGHVGLFVGHHPVINGLSYNTHTN* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5824 378 Gene3D Classic Zinc Finger 310 359 - -
Psa5g5824 378 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 12 373 IPR044300 GO:0010044|GO:0010447
Psa5g5824 378 SUPERFAMILY beta-beta-alpha zinc fingers 221 248 IPR036236 -
Psa5g5824 378 Gene3D Classic Zinc Finger 215 281 - -
Psa5g5824 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 250 IPR013087 -
Psa5g5824 378 PANTHER OS08G0562300 PROTEIN 12 373 - -
Psa5g5824 378 ProSitePatterns Zinc finger C2H2 type domain signature. 225 245 IPR013087 -
Psa5g5824 378 SMART c2h2final6 274 307 IPR013087 -
Psa5g5824 378 SMART c2h2final6 312 334 IPR013087 -
Psa5g5824 378 SMART c2h2final6 223 245 IPR013087 -
Psa5g5824 378 Pfam Zinc finger, C2H2 type 223 245 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5824 Psa-Chr5 504355122 504356908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5824 23 367 C2H2 Transcription Factor Family AT5G22890 46.439 3.18e-104 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g5824 zf-C2H2 0.00015 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5824 - - gmx:100802769 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5824 5 504355122 504356908 Psa5g5824 5 504355122 504356908 ECH