Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5822 ATGATGATGTCTAAAATGGATATGGAAGGAAGTATAGGCACTAAGGAACATCTCGCGAAAGGAAAGCGAACCAAACGAGGGATAAGGATGTTGTCTCCTTGCACCGTGGCGAACACCACGGTGACGTCGAGTTGCTCGAGTGCTATCGGAGATGGTGGAAGATCGTTCTCTTCCACCACCTTCGATAGCACTGAGCAGGAAGAGGAGGCTGACATGGCTAATTGTTTGATTCTCCTAGCTCAAGGAAGAACCGGAGGACAAAAAGAGACTCGTTGTCAAAACCACCATCAACAAGATGGTGGTTATAACAATATAGTAACGGAAAAGGCAACAAGAAACGGTTTTGAAAGCTATGAGTGCAAAACTTGTAACCGTTTTTTCCATTCATTTCAAGCGTTGGGTGGACACAGAGCAAGTCACAAGAAACCCAAGATGAAAGAAATCATTTCCGCAGGTGAAACCGAAGAACAAAACTATCATATTCATAACAAGAATGGTTCTACTATTAGTCCTCTTGTTCCTCCTCATGTTTCTCTTGAATTAAGGTGTGGTGGTAATCTAAACTTCCATGGCCATGGAAACAATAACAAACCCAATAGATCCAACAAGGTTCATGAGTGTTCGATTTGCGGCGCGGAGTTTACATCAGGTCAAGCATTGGGTGGTCATATGAGAAGACACAGAGCGTGTACTAACAAAAACAACAACAACAACGTTGGTGATGTTCATGGGAAGACTCGAAATATTCTAGAATTGGATCTTAATCTTCCGGCGCCGGAGGAGGATCTCCGGGATTCAACTTTTCAGTTTCCGGCAATGGTGGGTTGCCATTATTAG 837 0.4361 MMMSKMDMEGSIGTKEHLAKGKRTKRGIRMLSPCTVANTTVTSSCSSAIGDGGRSFSSTTFDSTEQEEEADMANCLILLAQGRTGGQKETRCQNHHQQDGGYNNIVTEKATRNGFESYECKTCNRFFHSFQALGGHRASHKKPKMKEIISAGETEEQNYHIHNKNGSTISPLVPPHVSLELRCGGNLNFHGHGNNNKPNRSNKVHECSICGAEFTSGQALGGHMRRHRACTNKNNNNNVGDVHGKTRNILELDLNLPAPEEDLRDSTFQFPAMVGCHY* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5822 278 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Psa5g5822 278 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 273 - -
Psa5g5822 278 SUPERFAMILY beta-beta-alpha zinc fingers 117 227 IPR036236 -
Psa5g5822 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Psa5g5822 278 PANTHER ZINC FINGER PROTEIN ZAT5 2 273 - -
Psa5g5822 278 SMART c2h2final6 205 227 IPR013087 -
Psa5g5822 278 SMART c2h2final6 118 140 IPR013087 -
Psa5g5822 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 227 IPR013087 -
Psa5g5822 278 Pfam C2H2-type zinc finger 118 143 - -
Psa5g5822 278 Pfam C2H2-type zinc finger 204 229 - -
Psa5g5822 278 ProSitePatterns Zinc finger C2H2 type domain signature. 207 227 IPR013087 -
Psa5g5822 278 Gene3D Classic Zinc Finger 187 251 - -
Psa5g5822 278 Gene3D Classic Zinc Finger 93 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5822 Psa-Chr5 504287011 504288357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5822 2 278 C2H2 Transcription Factor Family AT2G28200 39.365 3.20e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g5822 zf-C2H2_6 1.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5822 - - gmx:100794834 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5822 5 504287011 504288357 Psa5g5822 5 504287011 504288357 ECH
Psa5g5822 5 504287011 504288357 Psa6g3949 6 342782404 342784228 ECH