Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5810 ATGACCCAAGAAGCTGTTAAGTATGCGTTTTACTTTCTGATTGTTGGTGCTGCTATTTGGGAATCTTCATGGGCAGAGATTTCTTGTTGGATGTGGACGGGTGGGAGACAATCAACAAGGATGAGGATTAAGTATCTTGAAGCTGCTTTGGATCAAGATATTCATTTCTTCGACACTGAAGTTCGAACTTCCGATGTTGTTTTTGCCATCAACGCCGATGCTGTTATGGTACAAGATGCTATAAGTGAGAAGTTAGCTGTAATAGGAGGCATTCATACTACCACTTTGGCTAAGTTATCTGGTAAAATCCAAGAAGCTCTTTCTCAAGTTGGCAACATTGTGGAACAGACTGTTGTTCAAATTAGAGTGGTGTTAGCATATGTTGGAGAGACAAAAGCACTACAAGGCTATTCATCTACTCTGAGGGTTGCTCAAAGGATTGGTGTGGAGTATGGATGGTCTCTTGGACAGTTTACAGCGCCTGAAATCCTGGATAAGGATAATAAGTATAATTGTGGCAGATGTAAATCATATGAGAAAGCCAAGAAGAAGCTAACAGTATTAGAGGCGCCGAATATTCTTACGATTGTATTAAAGCGATTTCAGTCCGGTAACTTTGAGAAGTTGAATAAGTCTGTTCAATTTCCTGAAGTCCTGAATATGGCTCCATATATCAGTGGATTAAAAGACAGATCTCCAATATACTGTCTTTATGCAGTGGTTGTCCATTTGGATAGCATGAATGCTGCATATTCAGGACATTATGTTTGTTATGTGAAAAACATCCAAGGAGAATGGTTCAGGACTGACGACAGCAGGGTAGAACCTGTTGAATTGTCAAGAGTCTTGTCAGAAAGAGCATACATGCTTCTTTATGCAAGGCACTCTCCGAAGCCCCTGGGTTCAGTAAGTAGCAATGCAGTCTTTTCCACTGGAAAGTTTAAGAGGAGAAACTTGGAAGCCATTCCGGATGTTTCTAAGACACGATCAAATTCCATGGCTACGAGTGCTGATTCTTCCTCTCTCCATCAGAAGCATGTCAAGCATTCTCATGGGAACACTGTTGATGATTCCTTTAGCAGGGAACCTGCATATCCAGAAGAGTGGAGATTCAACTACCAGGGAAGGAATACTATGGCGGATTCTTCCAGCGAAAGCTCACTGTTCAGCTCTTCTGATGCAAAAGCTTCACCAGGAAGCCATATGACAATTCCTGAATCTCAAGGAACACCTTCAAGTCAGGTTTCTGTGAAACCTAAAGAGAATGAAAATCTTACTGGACTTGGTGCAGGAGCCGTCGCTAGGTTTGCGGAACTTCAAAATGGAAGAGCGCTGCGTTCTGTAATTGAATTAACCAAGGATCGACACTCTCGGACAAGGTTGCTGGCCTGCTTGTGCCTAATCTATATAAAGAATTCTTCGTCGCGCGTTCTGCAAGACATAGCAATCAAAACCAAATTGATATATATTTTTCTTGAGCTCCTTGATGATTCTGGTCAAGTTGGAGAAGAGGCTCCCTTTGCTTTTTCGAGTTTAGTTGCTGGAAAGGAAGATATGCAGAAGTTAGCATTTGAGGCAAATGCTATAGACAAATTCTACAATCACTTGCAAAATTGTGATTTACATCCCAAACGTCTTGAAGGGATATTTCTAGCACTGGCCGATCTTTGCTCAATACTGGAATGCTGCAGGGCGATGTTTATGTCATTGCAGGTTGCAGCCCTTGGTGCTATTAGCAACATAGTAGTGGACTTTACGCCAAATAAGTCAACATTCATACAATGCGGTGGCATTAAAGAGCTTGTCCATTTGACAAAGTCTATGGATTCGTCTTTAAGGTTGAATGCTATGTGCACTTTAGAAAATATTTCCGGTGGTTTGTCTTATGTCATATCTAGCCTCGGTCAAAGCCTCGAGTCATGCTCTTCTCCTACACAAATTGCCGACACTTTAGGAGCTATAGCATCAGCTCTTATGATATATGATAACAAGGCCGAATCTACCAAACCGTCAGATCCTTTGGTGGTTGAAGAGACGTTACTCAAACAATTCAAACCTCGCTTGCCTTTCCTTGTGCTAGAACGGACCATCGAAGCTCTTGCTAGTTTATACAAACAATGA 2121 0.4173 MTQEAVKYAFYFLIVGAAIWESSWAEISCWMWTGGRQSTRMRIKYLEAALDQDIHFFDTEVRTSDVVFAINADAVMVQDAISEKLAVIGGIHTTTLAKLSGKIQEALSQVGNIVEQTVVQIRVVLAYVGETKALQGYSSTLRVAQRIGVEYGWSLGQFTAPEILDKDNKYNCGRCKSYEKAKKKLTVLEAPNILTIVLKRFQSGNFEKLNKSVQFPEVLNMAPYISGLKDRSPIYCLYAVVVHLDSMNAAYSGHYVCYVKNIQGEWFRTDDSRVEPVELSRVLSERAYMLLYARHSPKPLGSVSSNAVFSTGKFKRRNLEAIPDVSKTRSNSMATSADSSSLHQKHVKHSHGNTVDDSFSREPAYPEEWRFNYQGRNTMADSSSESSLFSSSDAKASPGSHMTIPESQGTPSSQVSVKPKENENLTGLGAGAVARFAELQNGRALRSVIELTKDRHSRTRLLACLCLIYIKNSSSRVLQDIAIKTKLIYIFLELLDDSGQVGEEAPFAFSSLVAGKEDMQKLAFEANAIDKFYNHLQNCDLHPKRLEGIFLALADLCSILECCRAMFMSLQVAALGAISNIVVDFTPNKSTFIQCGGIKELVHLTKSMDSSLRLNAMCTLENISGGLSYVISSLGQSLESCSSPTQIADTLGAIASALMIYDNKAESTKPSDPLVVEETLLKQFKPRLPFLVLERTIEALASLYKQ* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5810 706 Gene3D Cysteine proteinases 130 299 - -
Psa5g5810 706 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 155 397 - -
Psa5g5810 706 MobiDBLite consensus disorder prediction 342 361 - -
Psa5g5810 706 MobiDBLite consensus disorder prediction 382 420 - -
Psa5g5810 706 Pfam ABC transporter transmembrane region 5 88 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g5810 706 MobiDBLite consensus disorder prediction 324 341 - -
Psa5g5810 706 SUPERFAMILY Cysteine proteinases 148 294 IPR038765 -
Psa5g5810 706 MobiDBLite consensus disorder prediction 324 361 - -
Psa5g5810 706 SUPERFAMILY ABC transporter transmembrane region 4 156 IPR036640 GO:0005524|GO:0016021
Psa5g5810 706 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 88 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g5810 706 Gene3D - 421 702 IPR011989 -
Psa5g5810 706 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 295 IPR028889 -
Psa5g5810 706 Pfam Armadillo/beta-catenin-like repeat 587 624 IPR000225 GO:0005515
Psa5g5810 706 SMART arm_5 585 625 IPR000225 GO:0005515
Psa5g5810 706 SUPERFAMILY ARM repeat 436 666 IPR016024 -
Psa5g5810 706 Pfam Ubiquitin carboxyl-terminal hydrolase 172 292 IPR001394 GO:0004843|GO:0016579
Psa5g5810 706 Gene3D ABC transporter type 1, transmembrane domain 1 89 IPR036640 GO:0005524|GO:0016021
Psa5g5810 706 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 155 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5810 Psa-Chr5 503905127 503908077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5810 1 156 Calmodulin-binding Proteins AT2G36910 62.827 6.30e-67 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5810 K11855 - gmx:100792437 392.504