Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5804 ATGGCAGAGAGAATTCACATATCTAATGAAGTCGTCAAAAATGAAGATAGTAACGATATCGGAACAAAACCCTCTTCGCCAAATAGAAGAAAACGTTCCTTCTTCGACTTAAACGAAGAAGCGGTCGACGATGGAGATGATGATCATGTGACACAACTTGTAAGTGATGAAGGCCCTAATTGTGGTGAGATAAGCAACAACAATGAGATATCATCACAAGAGGAGAACTTGAGTAGCAATGATCGTAATTCAAGTGATCAAGAAGGGAAAGGGCGAGGAAGTACCGTAAGACAATATGTTAGGTCGAAAATGCCTAGGCTTCGATGGACTCCTGATCTTCATTTATCTTTTGTGCATGCTGTTGAAAGACTTGGAGGCCAAGAAAGAGCAACACCCAAGTTGGTTCTCCAATTGATGAATGTGAGAGGACTTAGCATTGCACATGTGAAGAGTCATTTGCAGATGTATAGGAGTAAAAAACTTGATGAGTCTGGCCAAGTTTTATCCCAAAAAAATAGGGAAATGCAAGGAAAGCATCATCATATTTTGGATATGTATGGAAGATTTAATGTTCAAGGACACTTTGGTGTTAATAATAACAACTATTTGCACCCATATAATGAAATCAAAGCTCATAGCTCTTCAAGGTTTCATCAAAGTGGTCTTTTCAACAATCATGTGATCTTTAGATCAAGTTCAATGTGGGACAAAGATTTATATAAAACAAGTTCACATATATTTGATGTAAAAGATGCAATAACAAGAAATAATAATGGACCTATAAATTCTAGTCAAATAAATCAGTTACTACCCGAAGAAAAGAAGTGGCCTCCTCGATTACAAGGAAGTGAAAATCATGAAAGCTTGTTTCGAGATGATCATAGTGCACAGCTTTTTTCATGGAGTCCTGTCTTCACTAAGGTGCATGATAAAAAGGATCAAATGCAAGAATTCAAACACCAACCTCAAGTATCAAAGAAAGAGTATTTACCAAGTTTCTTAGAACTAAAACTAAGTCGAGACTCGGAAATTAGTGTTAAGAATCAGATAAATATGAATCCAGCGGGCGAAGAAGAAATACACACAATTCTCTCTCTTTAG 1101 0.3669 MAERIHISNEVVKNEDSNDIGTKPSSPNRRKRSFFDLNEEAVDDGDDDHVTQLVSDEGPNCGEISNNNEISSQEENLSSNDRNSSDQEGKGRGSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQKNREMQGKHHHILDMYGRFNVQGHFGVNNNNYLHPYNEIKAHSSSRFHQSGLFNNHVIFRSSSMWDKDLYKTSSHIFDVKDAITRNNNGPINSSQINQLLPEEKKWPPRLQGSENHESLFRDDHSAQLFSWSPVFTKVHDKKDQMQEFKHQPQVSKKEYLPSFLELKLSRDSEISVKNQINMNPAGEEEIHTILSL* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5804 366 Gene3D - 104 161 - -
Psa5g5804 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 61 330 IPR044848 GO:0003700
Psa5g5804 366 MobiDBLite consensus disorder prediction 56 99 - -
Psa5g5804 366 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 61 330 - -
Psa5g5804 366 SUPERFAMILY Homeodomain-like 103 159 IPR009057 -
Psa5g5804 366 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 105 160 IPR006447 GO:0003677
Psa5g5804 366 MobiDBLite consensus disorder prediction 58 92 - -
Psa5g5804 366 MobiDBLite consensus disorder prediction 1 17 - -
Psa5g5804 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 161 IPR017930 -
Psa5g5804 366 Pfam Myb-like DNA-binding domain 107 157 IPR001005 -
Psa5g5804 366 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5804 Psa-Chr5 503438493 503440509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5804 96 185 G2-like Transcription Factor Family AT2G42660 67.778 6.89e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa5g5804 Myb_DNA-binding 9.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5804 - - mtr:MTR_2g084230 421.394