Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5785 ATGCAACGAGCAAGTGATCTTCTTCTCGGCGTCTCAATGTTCGCTGAGCCAATCAGCTTTAAAATTATGGATCGTGCGGGTTCAGCTATGAATGAGTTGTGCAGTATGGGAATTATAGGTAAACCTTTATGGCATCAACATAATTCAGATCGATACGAAGTCCTTAACAATATCGAATATTTAAAACATGTTGGTCGGTTTGATGCGACGTTAATGGATATTGTTAAATTGGCTGAGGTCGGAGAACTTCAAGCTTTACCTAGCTTTGATTTGTATGGAAATCAGATCAACTCAATTTCGAATGAAAAATCCGCACAAGGGTTACAGATCGAAGCTTCGCGAGATACGACAATGGTTAACGCCGGTCCTATTGACATTGTTGAATTACTTATGGACGTGAATCAATGGGGCATGACATTTCACAACATTGTTTCAAGAGCAACGGTTCTTGGAAGCTTTATGAATGGAGTGGAAGGAAGTTATGATGGGAGATTGCATGTGATGAATGCGGAATTTCATTTGCCTAGTCCTGTGATACCGACTCGAGAGTGTTGTTTTGCTAGATACTGCAAACAATTCTCTCCTAATGATTGGGTTGTTGTTGATGTATCTTTGGAGGATATTTTCCCTTATCCATCTAACAATTTTCGAAAAAGACCTTCAGGTTGTATGATCAAAGGAATGCCTAATGGATACTCTAAGGTTACATGGGTGGAGCATGTGGAAGCAGACCATAGCCAATTGAATGATCTTTTCAAGCCATTAGTAACCTCTGGTTTGTCTTTCGGTGCAACACGGTGGCTAGCTTCCATTGTTCAACACTTTGAGTGGTCTGAAACACATAAGGCTACACCATTTTTTGCTGATGGGAAGATTTTTATACCTCAAACTGGAAGGACAAGTTTCTTGAAACTGGCTGATAGAATGATGAGAAAATTTTGTGGCAACCTTAGCGCTACAACGACCAATCCATGGATGCGACTCGCTCCATTTCCCAGTTCAACCGATGTTAGAGTTATGATTCAGAATAATATGTCTGGTACTTCAAATAACTCTGTCGGAACAACGATAGTTTTTTGTACTACTATTTGGCTGAATATCTCTCCAAATCGCTTATTCAACTTCCTTCGCCACGAGAAGTCCAGAAACAAGTGGGATATACTTTCGCAAACACTTTCAATTCAACAATTCGCATGCATGACTATCGGCGAACATATGGAGAATCGTGTTTCTCTGCTGCGAGCAAGTACTTCCGAGGACAAGACTGAAATCTTTTACCTACAAAAGAGTTACGCAGACGCATCAGCTTCCTACGTGGTTTATGCTCCACTGGACGAACCGGCATTGGTTCATCTTGCAAAAGGATTGAAACCAGACAATGTTATTGCATTTCCTTCGGGGTTTGCTATCATTCCGGGAGGGTTACCGAAAGATAATGGCAACAATGCTGGTAGTAATGAAAGTCTTCTAACTATCTCATTCAATCTCATTGATAAAGCCACCCATGTTTCACGTGTCCCTCCTGAGTCGGTTGAAACTATCTATAGGATCATTACAGAAACTGTTACTGCTATAAAGGATGCATTATCGTGCCACAGTCGACTCAACAACTGGGCGCAAGATGAGTTGAAAAATGGCGCGGGAAAGAAATAG 1653 0.4114 MQRASDLLLGVSMFAEPISFKIMDRAGSAMNELCSMGIIGKPLWHQHNSDRYEVLNNIEYLKHVGRFDATLMDIVKLAEVGELQALPSFDLYGNQINSISNEKSAQGLQIEASRDTTMVNAGPIDIVELLMDVNQWGMTFHNIVSRATVLGSFMNGVEGSYDGRLHVMNAEFHLPSPVIPTRECCFARYCKQFSPNDWVVVDVSLEDIFPYPSNNFRKRPSGCMIKGMPNGYSKVTWVEHVEADHSQLNDLFKPLVTSGLSFGATRWLASIVQHFEWSETHKATPFFADGKIFIPQTGRTSFLKLADRMMRKFCGNLSATTTNPWMRLAPFPSSTDVRVMIQNNMSGTSNNSVGTTIVFCTTIWLNISPNRLFNFLRHEKSRNKWDILSQTLSIQQFACMTIGEHMENRVSLLRASTSEDKTEIFYLQKSYADASASYVVYAPLDEPALVHLAKGLKPDNVIAFPSGFAIIPGGLPKDNGNNAGSNESLLTISFNLIDKATHVSRVPPESVETIYRIITETVTAIKDALSCHSRLNNWAQDELKNGAGKK* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5785 550 Gene3D - 98 274 IPR023393 -
Psa5g5785 550 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN ROC2 2 533 - -
Psa5g5785 550 SUPERFAMILY Bet v1-like 104 276 - -
Psa5g5785 550 SMART START_1 67 277 IPR002913 GO:0008289
Psa5g5785 550 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 2 533 IPR042160 -
Psa5g5785 550 CDD START_ArGLABRA2_like 22 276 - -
Psa5g5785 550 Pfam START domain 98 272 IPR002913 GO:0008289
Psa5g5785 550 SUPERFAMILY Bet v1-like 298 473 - -
Psa5g5785 550 ProSiteProfiles START domain profile. 15 280 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5785 Psa-Chr5 502012987 502016064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5785 1 531 Homeobox Transcription Factor Family AT4G04890 38.971 8.02e-114 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5785 K09338 - jre:108992281 467.618