Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5742 ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTATGCTTTGATTGACGATATTCCCGTCTCCGATGGCTCCTTCGCCTTCACCTGGCCCCCATCACATCCTCTCAATGTCTGTGTTGATATGGATGGTTCTCTGGGAGATTCTGATGGTATCAAAGATCCTGGTTCAAAGAAGAGAGGTAGATCAGATTCGTCTGCTCCTTCCAGCTCTAAGGCATGTCGAGAGAAGCTGCGGAGGGATAGGCTGAACGATAAGTTTGTTGAATTAGGCTCTATCTTGGAGCCTGGAAGGCCACCAAAAACAGACAAGGCAGCAATTCTGACTGATGCTGTCCGAATGGTATCACAGCTACGCGGTGAAGCCCAGAAGTTGAAAGACTCCAATTCAAGTCTTCAAGAAAAGATTAAAGAATTAAAGGTTGAGAAGAATGAACTCCGTGATGAGAAGCAGAGGCTTAAGGCTGAGAAAGAGAAGCTGGAGCAGCAGGTGAAATCAATGAATTCCCAACCCAGTTTCTTGACACACCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGCCCATAGCAACAAACTAATGCCTTTCATGAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCCTCTGTGGATACCTCACAGGATCATGTGCTCCGTCCACCAGTTGCCTAA 687 0.4745 MVSPENTNWLFDYALIDDIPVSDGSFAFTWPPSHPLNVCVDMDGSLGDSDGIKDPGSKKRGRSDSSAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILTDAVRMVSQLRGEAQKLKDSNSSLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMNSQPSFLTHPPAIPAAFAPQGQAHSNKLMPFMSYPGVAMWQFMPPASVDTSQDHVLRPPVA* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5742 228 Pfam Helix-loop-helix DNA-binding domain 71 118 IPR011598 GO:0046983
Psa5g5742 228 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 228 - -
Psa5g5742 228 MobiDBLite consensus disorder prediction 52 78 - -
Psa5g5742 228 CDD bHLH_AtILR3_like 72 147 - -
Psa5g5742 228 Coils Coil 115 170 - -
Psa5g5742 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 143 IPR036638 GO:0046983
Psa5g5742 228 SMART finulus 73 124 IPR011598 GO:0046983
Psa5g5742 228 Gene3D - 67 144 IPR036638 GO:0046983
Psa5g5742 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 118 IPR011598 GO:0046983
Psa5g5742 228 PANTHER BHLH TRANSCRIPTION FACTOR 1 228 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5742 Psa-Chr5 499053664 499056608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5742 1 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.130 3.87e-114 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g5742 HLH 7.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5742 - - ccaj:109815088 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5742 5 499053664 499056608 Psa5g5742 5 499053664 499056608 ECH