Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5740 ATGAAGTGCCTCAGAATTCAGATCAATTACAGAGAAAACATCCAAATTTTGATTAGTACTTGCAATCCACAGTTGAAGGAAAACTTTCTTAACTGTTTGAGAAAAAACAGCGTTCCATTACAAGATCAATCCAAGAGTTGGAACACTGCTTACGAGGGATCAGGTTCATCCAAAAGATATCCGCGTCGAATTTCGCCTCGATACTTAGCAGAAAAACAAGACAAAGATGGTGGCAATAATGGATCATCTAAAAAAGATAAAAGTGATAGTGATTCTGATAAATCATCGAAGAAGAAGTCGTCGAAGTCTTCTGACTCTAAAAGTAAACAACAAGAGAAAGCGGTTTATAATGCCATAGCTATGATTGCAATGGTGACATTTGTATTTGCAGTATGTATCTTTTTATGTTGTTGTAGGTGTTGTGGAAGTGGTAGAGTTAATCAAACCGATGAAAGACCACTTCTCAGCATGAGCAGGAGTGATTACTCTGTTGATTCTTCTTCAAATAATAACTCCTCAAAAATTTCAATACATGAGGAGAGACATGGAATTCAATCAATAAGTAGTATTTTGGCTGACGAGAGAAAGAACTCGATAAAAGAAGATGCTGCAAGACCATCATTTGACCTTAAACCTCCACCTGGTAGGGTAGGAAGTGCTATTCCACCTTTGAAACCTCCTCCAGGAAGACCTGATCCTCTTCCACCCGAACCACCATTAGTTAAGACTTTTGATTATGCCGTTAATCCACCGCCACCACCTCCTCCCCCTAGACTTCAAACGCCTAGCAGTGGTGCTGTTCTTCCTCCCGGACTACCGAGGCCTGGCGGTGGTGGCTCTCCTCCACCTCCACCGCCGAAACTTGGCAATAGTGGTCCTAACCCTCCTCCTCCACCACCACCACGTGGAAAACCAGGCGGTCCTCGACCGCCACCACCTCCTAAGAGTGGTGGAGGTCCTCCAAGACCTCCACCTGCATTTGGTCAAAAAGGTACTAGACCTTTACATGGTGGACCAAAGGTTCAAGGGAACGTTGAATTTAGTTCAGAAGGTGAAGGTGAATCTGATGATGCTCCTAAAACCAAGTTAAAGCCTTTTTTCTGGGATAAGGTTCAAGCCAACTCAGATCAAACTATGGTTTGGAATCAACTCAAAGCAGGATCATTCCAGTTTAATGAAGAAATGATGGAAACCCTTTTTGGATATAGTACTCCATCAATGGAGAAAAAAGGTGGACAGAAGAAAGATCCTTCCTTCCGTGATGCTCCACCTCAGTTTGTTCAAATCATTGAGGCAAAGAAAGCACAAAATTTATCAATTTTGTTGAAAGCATTAAATGTGACACTAGAAGAAGTCCGTGATGCACTACTTGAAGGAAATGAGCTCCCAGCAGAATTTCTTCACACTCTGATAAAAATGGCACCAACATCAGAGGAAGAACTTAAGCTTAGACTTTTCAGTGGTAGTATTTCTCAACTTTGTCCTGCAGATCGGTTCCTTAAAGCCCTGGTTGAGATTCCCTTTGCTATTAAACGAATGGAAACATTGCTTTACATGAGTACTCTTCAAGAGGAGCTCACATCTACCCGAGATTCGTTCTCAATTTTAGAGGTTGCTTGTAAGGAACTAAGGAGCAGTAGGTTATTCCTCAAGCTTCTTGAAGCTGTTCTTAAAACAGGAAACCGAATGAACGATGGAACATTCCGTGGGGGTGCACTTGCATTCAAACTTGACACGCTACTAAAATTATCTGATGTAAAAGGAGTAGATGGGAAAATCACCCTCTTACACTTTGTTGTTCAAGAGATAATGCGAACAGAAGGAATAAGAGCGGACTCGAATGAGGTTAATCATGAATCAGAAGAACACTACCGTGAAGTAGGTCTCCAAGTTGTTTCACATTTGAGCAATGATCTTGAGAATGTGAAGAAAGCGGCAGCACTAGATGCGGATGGCTTGACGAGCACAACAGCTAGGTTAGGCTACGGTCTTATAAAAACGAGAGATTTCTTTAACAAAGAACTGGTGAACAACTTAGAGAACGATAAAGGGTTCCATGAGACAGTTAAGAGGTTTGTGGAGAAAGCTGAAGTTGAAGTCACAGGTTTGTTAGAAGAGGAGAAGAAAATTATGGCTCTTGTGAAGAGTACGGGTGATTATTTTCATGGGAGTACAGGGAGAGATGAAGGGCTGAGATTGTTTGTAATAGTACGCGATTTCTTAATAATGTTGGATAAGGTATGCAGAGAGATTCAAAAAGCACCCAAGAAGCCAATAAAGAATGTGACTAATGCTAATGCTAATTCTAAACCGGCAACGCCGAAAAAGCGTCCTCCACCTCCGGATATTCGTCAGCGGTTGTTTCCGGCTGTGGTAGAGAGGAGAGTGGGGGATGATTTTAGTTCAGATGAAGACAGTCCATAG 2424 0.42 MKCLRIQINYRENIQILISTCNPQLKENFLNCLRKNSVPLQDQSKSWNTAYEGSGSSKRYPRRISPRYLAEKQDKDGGNNGSSKKDKSDSDSDKSSKKKSSKSSDSKSKQQEKAVYNAIAMIAMVTFVFAVCIFLCCCRCCGSGRVNQTDERPLLSMSRSDYSVDSSSNNNSSKISIHEERHGIQSISSILADERKNSIKEDAARPSFDLKPPPGRVGSAIPPLKPPPGRPDPLPPEPPLVKTFDYAVNPPPPPPPPRLQTPSSGAVLPPGLPRPGGGGSPPPPPPKLGNSGPNPPPPPPPRGKPGGPRPPPPPKSGGGPPRPPPAFGQKGTRPLHGGPKVQGNVEFSSEGEGESDDAPKTKLKPFFWDKVQANSDQTMVWNQLKAGSFQFNEEMMETLFGYSTPSMEKKGGQKKDPSFRDAPPQFVQIIEAKKAQNLSILLKALNVTLEEVRDALLEGNELPAEFLHTLIKMAPTSEEELKLRLFSGSISQLCPADRFLKALVEIPFAIKRMETLLYMSTLQEELTSTRDSFSILEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGALAFKLDTLLKLSDVKGVDGKITLLHFVVQEIMRTEGIRADSNEVNHESEEHYREVGLQVVSHLSNDLENVKKAAALDADGLTSTTARLGYGLIKTRDFFNKELVNNLENDKGFHETVKRFVEKAEVEVTGLLEEEKKIMALVKSTGDYFHGSTGRDEGLRLFVIVRDFLIMLDKVCREIQKAPKKPIKNVTNANANSKPATPKKRPPPPDIRQRLFPAVVERRVGDDFSSDEDSP* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5740 807 Coils Coil 435 455 - -
Psa5g5740 807 SUPERFAMILY Formin homology 2 domain (FH2 domain) 424 758 - -
Psa5g5740 807 PANTHER FORMIN-RELATED 91 805 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Psa5g5740 807 PANTHER FORMIN-RELATED 11 45 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Psa5g5740 807 MobiDBLite consensus disorder prediction 239 263 - -
Psa5g5740 807 MobiDBLite consensus disorder prediction 159 180 - -
Psa5g5740 807 SMART it6_source 353 759 IPR015425 -
Psa5g5740 807 MobiDBLite consensus disorder prediction 759 788 - -
Psa5g5740 807 MobiDBLite consensus disorder prediction 49 111 - -
Psa5g5740 807 MobiDBLite consensus disorder prediction 239 341 - -
Psa5g5740 807 MobiDBLite consensus disorder prediction 64 109 - -
Psa5g5740 807 MobiDBLite consensus disorder prediction 274 328 - -
Psa5g5740 807 ProSiteProfiles Formin homology-2 (FH2) domain profile. 353 770 IPR015425 -
Psa5g5740 807 PANTHER FORMIN-LIKE PROTEIN 91 805 - -
Psa5g5740 807 PANTHER FORMIN-LIKE PROTEIN 11 45 - -
Psa5g5740 807 Gene3D Formin, FH2 domain 358 777 IPR042201 -
Psa5g5740 807 MobiDBLite consensus disorder prediction 159 174 - -
Psa5g5740 807 Pfam Formin Homology 2 Domain 355 744 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5740 Psa-Chr5 498940365 498944754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5740 356 796 FH2 protein (formin) Gene Family AT5G54650 61.388 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5740 - - gmx:100792872 674.085