Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5720 ATGGATTCTCAGCAACTTTATAGATTCAGTATGACAAGTAGTGCAGGATTACCTAACATGTCATCTTTTTCCACTTTTCCATCACTACAAAATGGTTTGCTTGGTTCGTTGAAAGTTGGCATTGGAAACTCGCCTGATTCGCCTTTTTCATCTCATTTTGATTCTGATAATCTTTCTGCATTTAGTGACAACTACGAGCAACAGAACTCGGGTGAAACGCTCTCTGGTATAAGCGTATCGTATAACTCAGCGCTGGAAACTAACCGTTATTTGCATAAATCGGTTTCATCGGTCGACAATCTCAAGGGAAGTTTGCAGTTGTATTCAGCTAGAAGATCTCTTCCGCCGAGTTGTAACCAGATAGTTCAACACGCGTTGTTGGAACTAGAAACTGCGCTGATGGCTCCCGATGATAACGAAGTTACTGCATCTAATTCTTCATTGGGTGAGAGCATCAAGGAAACGGCATCTGGACCGAGATATAGATCATGGGGCCATGTGAGTCAAGGGTCACAATATATTCAAAATCAACCGTCACATGCTACTAGTAGTAGTAGGCAATCGAATGAAGTTGTGCATGTAGAAAAACGTCGAAAGTTGGAGGAGGAGTCATCTCTACAAGCGTTCCCGTCAGGTGATTTAAAGCAATTACTGATTGCATGTGCCAAAGCCATGGCTGAAAACAACATACAAGATTTCAACCGATTGATAGAAATGGCTAGAAATGCCGTGTCTATCAATGGGGAGCCAATCCAGAGGCTCGGTGCTTATATGGTAGAAGGGCTTGTTGCGAGGAAGGAAGCATCGGGGAATAGCATCTATCGTGCTCTTAAGTGTAGAGAGCCTGAAGGCGAAGAATTACTCACTTACATGCATCTGCTTTACGAGATCTGTCCCTACTTGAAATTTGGTTACATGGCTGCGAATGGAGCCATTGCTGAAGCTTGTAGGAATGAGGATTACATACACATCATAGACTTTCAGATTGCTCAAGGAACTCAATGGATGACACTTCTTCAAGCTCTTGCTGCAAGACCTGGCGGGGCTCCCCACGTGCGGATCACAGGAATCGACGATCCAGTCTCTAGATATGCTCGTGGACATGGACTAGAAGTAGTCGGGAAAAGATTGGCCTTGATGTCAAAGAAATTCGGCATCCCAGTTGAGTTTCACGGGATTCCTGTTTTCGGTCCCGATGTGACAAGAGACATGCTTGATATCAGACATGGAGAGGCTTTGGCAGTGAATTTTCCATTGCAACTCCATCACACAGCTGATGAGAGTGTTGATGTGAATAATCCAAGAGATGGACTTCTAAGATTGGTGAAATCTCTTTCTCCCAAGGTGGTCACACTCGTCGAGCAGGAATCAAACACAAACACAACCCCTTTCTTCAACAGGTTCATAGAAACATTAGATTACTACTTGGCAATCTTCGAGTCAATCGATGTCACCCTCTCGAGAAACAGCAAGGAGAGGATTAACGTGGAGCAGCATTGTTTGGCTCGCGATATCGTCAATGTCATTGCTTGTGAAGGAAAGGAAAGGATCGAGCGGCACGAACTGTTCGGCAAGTGGAAGTCTAGGCTGACAATGGCCGGATTTACTCAATGTCCTTTGAGTTCTTATGTGAATTCTGTTATAAGAAGTCTTCTGAGATGCTATTCAGAGCATTATACATTAGTGGAGAAAGATGGAGCCATGTTGTTGGGGTGGAAGAACAGAAATTTGATATCAGCTTCAGCTTGGCATTGA 1755 0.4399 MDSQQLYRFSMTSSAGLPNMSSFSTFPSLQNGLLGSLKVGIGNSPDSPFSSHFDSDNLSAFSDNYEQQNSGETLSGISVSYNSALETNRYLHKSVSSVDNLKGSLQLYSARRSLPPSCNQIVQHALLELETALMAPDDNEVTASNSSLGESIKETASGPRYRSWGHVSQGSQYIQNQPSHATSSSRQSNEVVHVEKRRKLEEESSLQAFPSGDLKQLLIACAKAMAENNIQDFNRLIEMARNAVSINGEPIQRLGAYMVEGLVARKEASGNSIYRALKCREPEGEELLTYMHLLYEICPYLKFGYMAANGAIAEACRNEDYIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSRYARGHGLEVVGKRLALMSKKFGIPVEFHGIPVFGPDVTRDMLDIRHGEALAVNFPLQLHHTADESVDVNNPRDGLLRLVKSLSPKVVTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLSRNSKERINVEQHCLARDIVNVIACEGKERIERHELFGKWKSRLTMAGFTQCPLSSYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKNRNLISASAWH* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5720 584 MobiDBLite consensus disorder prediction 162 189 - -
Psa5g5720 584 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 21 584 IPR005202 -
Psa5g5720 584 Pfam GRAS domain family 214 583 IPR005202 -
Psa5g5720 584 MobiDBLite consensus disorder prediction 141 197 - -
Psa5g5720 584 ProSiteProfiles GRAS family profile. 205 584 IPR005202 -
Psa5g5720 584 Coils Coil 223 243 - -
Psa5g5720 584 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 21 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5720 Psa-Chr5 497956258 497959263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5720 205 583 GRAS Transcription Factor Family AT1G50600 62.797 1.20e-177 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa5g5720 GRAS 9.3e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5720 - - adu:107462432 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5720 5 497956258 497959263 Psa5g5720 5 497956258 497959263 ECH