Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5713 ATGGCTGATGATGATCAATTTCATCATTCAAGTGGAAACTGGTGGGAATCAGCATCAAGAAACATGAGATTTGATCATACAAGTGGTGGAACATCACAACAATCTTCTTCTTCTGCCATCACCAACAACAATAATATAGTTGATTTTGGTTGGCAAAATTCAGATATGGTTGAGATGAAACCAAGATCTTCCATGGATAATTCTTCTGTGGTTTTTCATGATACTCGGAAACTCGAACAAAATCAAGATTCTTCAAATTCTACTGACCCTAACTTGCATATGATGGGTTTGGGACTTTCTTCTCATTCCATGGATTGGAACCAACCATCTTTGATAAGAGGTGATGAAAAGGGAACAGAAAACAGTTTCAGGTCAATATTGGAAGAGAATTTGAATTCAACAAGAAACAATTTTGAGCAAGAAAATGTGATGGGAATGTGTCAACAAGTGAATAGAAATTTTTCTTTGGATCAAAACCAGTTTAGTCCTCAATATAGTTCTGGAGACAGCAATGTTATTCAAATGGATTCTTCAGCTTTATATGGAACTCCATCAATTTTACAAGGCTCATCCATGAATAGTTTTCCATATCCAACAAATAACTATGGATTATTAAACTCTAATAATGAGTTGAATATGAACATGCCTTCTAATAATTGGTCTAATAATAAAGTTCCTCAGTTTTTGATGAGAGCTTCACCTCCAAAACAATCATCCACAAGTAACCAGTTGCATTTTACTAATAACACCCCTTTTTGGAATGCTTCTGAGCCTCCGAATTCTATTAAGGATGTTAGGTCAAGTTTCTTCCCCTCTTTGCAACCTCAATTCTCCACACCAAATTTTGATTCACATTCAAAGAATATAAGTGAAGTGAATACTGTGGTGAAGAAAAGTGGGAGTGAGCCAGCACTCAAAAGGACTCGTAACGAAACTCCATCAACTTTGCCAGCTTTTAAGGTCAGAAAAGAAAAGATGGGAGACAGAATCACTGCACTCCAACAATTGGTGTCTCCTTTTGGAAAGACTGATACAGCCTCAGTGCTTTCTGAAGCCATTGAATACATCAAATTTCTCCATGAACAGGTTACACTTTTGAGCACCCCATATATGAAAAGTGGAGCTCCATCAGATACTCATCAGAATTCAGGTAAATCAAAAAAATCCGATGGCGCAAAGCAAGATCTAAGAAGTCGAGGTCTGTGTTTGGTACCGATTTCAAGCACATTTCCAGTGACTCATGAAACAACAGTTGATTTTTGGACACCAACATTTGGAGGAACATCAAGATAA 1293 0.3697 MADDDQFHHSSGNWWESASRNMRFDHTSGGTSQQSSSSAITNNNNIVDFGWQNSDMVEMKPRSSMDNSSVVFHDTRKLEQNQDSSNSTDPNLHMMGLGLSSHSMDWNQPSLIRGDEKGTENSFRSILEENLNSTRNNFEQENVMGMCQQVNRNFSLDQNQFSPQYSSGDSNVIQMDSSALYGTPSILQGSSMNSFPYPTNNYGLLNSNNELNMNMPSNNWSNNKVPQFLMRASPPKQSSTSNQLHFTNNTPFWNASEPPNSIKDVRSSFFPSLQPQFSTPNFDSHSKNISEVNTVVKKSGSEPALKRTRNETPSTLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTLLSTPYMKSGAPSDTHQNSGKSKKSDGAKQDLRSRGLCLVPISSTFPVTHETTVDFWTPTFGGTSR* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5713 430 SMART finulus 321 365 IPR011598 GO:0046983
Psa5g5713 430 CDD bHLH_AtbHLH_like 316 367 IPR045239 -
Psa5g5713 430 Gene3D - 320 373 IPR036638 GO:0046983
Psa5g5713 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 372 IPR036638 GO:0046983
Psa5g5713 430 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 36 151 - -
Psa5g5713 430 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 148 419 - -
Psa5g5713 430 MobiDBLite consensus disorder prediction 373 394 - -
Psa5g5713 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983
Psa5g5713 430 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 151 - -
Psa5g5713 430 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 148 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5713 Psa-Chr5 497164817 497169697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5713 244 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 61.809 1.92e-67 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5713 - - gmx:100778697 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5713 5 497164817 497169697 Psa5g5713 5 497164817 497169697 ECH