Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5700 ATGAGACAAGCAGGTGCATATTCAAGTTTACTAAGTGGTGGAATATCAGGAAGAACAGGTCCACATTCATTACCCTTAGCAAGAATAAAGAAGATAATGAAAAACTCTAGTGAAGATGTGAAGATGATATCAGGTGTAGCTCCCATTGTTTTCTCAAAAGCTTGTGAGCTTTTCATTGAAGAGATTACTAGGAGGTCTTGGATTATGGCTATTGATGGTAAAAGAAGAACTTTGAATAAAGAAGATGTTGCTTCTGCTGTTATTGCTACTGATGTTTTCGATTTTTTGATCACTTTGGTTTCTGATTCTGAGAGTGGTTTAGTTGGTTGTGATGAAACTGATGACACTCTCATACAAATGGAAACTATTTGA 372 0.3575 MRQAGAYSSLLSGGISGRTGPHSLPLARIKKIMKNSSEDVKMISGVAPIVFSKACELFIEEITRRSWIMAIDGKRRTLNKEDVASAVIATDVFDFLITLVSDSESGLVGCDETDDTLIQMETI* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5700 123 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 106 - -
Psa5g5700 123 Gene3D Histone, subunit A 14 101 IPR009072 GO:0046982
Psa5g5700 123 SUPERFAMILY Histone-fold 16 96 IPR009072 GO:0046982
Psa5g5700 123 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Psa5g5700 123 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5700 Psa-Chr5 495960671 495961319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5700 22 104 CCAAT-HAP5 Transcription Factor Family AT3G48590 62.651 1.37e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Psa5g5700 CBFD_NFYB_HMF 6.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5700 - - gmx:100777614 189.119