LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g5697	ATGGAAAGCTTCAACGTGCTAGTTTATTGCTTTCTTTTATTCCACTTCATCCCAACCTTCAATACCTTGGAAACCATTCTACCAGGACAATCAATCAAAGGTAATGAGACACTAATCTCAACAGATGGAACTGTTGAAGCTGGTTTCTTCAACTTTGATAATTCAAATAACCAATATTTTGGTATATGGTACAAGGACATTTCACCAAGAACTGTTGTGTGGATAGCAAACCGAGATTCTGCAGTCGAAAACTCATCAGGAGTTTTGAATCTCACTGATAAAGGAACTCTTGTTATTGTTGATGATTCCAAAGGTGTTATAGTATGGTCCTCTAACATATCAACAACAGGTGCAAACCCAATTCTGCAACTCTTGGAAAATGGAAACCTTGTTGTGAAAGATGAAACCAAACCAGATACTATTTTGTGGAAAAGTTTTGATTTTCCTGGTGACACTTTACTCCCTGGTATGAGAATCCGAAGCAGTTTGGTAAAAGGCGATTCTACAGGTTTGGTTTCGTGGAGAGATACACAAGATCCTTCTACTGGTTTGTATTCATTTCATATAGATACTAATGGTTTTCCTCAAGTAGTGACTACTAGAGGAAACACATTAGTGAATCGAGTTGGTTCTTGGAATGGATATAGTTTATCTGGAAGTTCGTCTCCGGATCTTTTCAAATCCTTTAATATCACTTTTGTGATTACTGAGAAGGAAGTTTCTTATGGATATGAACTTTTGCACAACTCAGTTTTTTCAAGGCATATGATTAATTCGGTGGGACAAGTAACGCGGTTCTCGCTGTCGGATGATAGAAAAAGTTGGCAAATTCTCTTCGTTGGCCCATCGGATCGGTGTGACAATTATGCTATCTGTGGTGCAAATTCTAACTGTGATGCTGATAATTCTCCAATATGTGAATGTCTTGACGGTTTCATTCCAAAATCTCGAGAAAAATGGAATTCGCAAAATTGGACTGATGGTTGTGCTAGGAGAGTGAAATATGAGAAACTCTTGATCTACGAATTCATGATCAACAGAAGCTTGGACTACTTAATTTTCGACCAAACTAGAAAAAGTTTACTGCGTTGGACTATACGATTCCAAATTATTCGCGGGATTGCTCGAGGACTTGTTTATCTTCATGAAGATTCTAGATTAAGAATTATCCATCGAGATCTCAAGACAAGCAATATTCTTCTTGACGAAAATATGAATCCTAAAATATCAGACTTTGGTCTTGCTAGAACATTATGGGGAGATGAAGCTAAAGGTGAAACAAGAAGAGTAGTAGGAACTCACGGTTACATATCTCCCGAATATGCAACACGTGGATATTTCTCGGTGAAATCTGATGTATTTAGTTTTGGTGTTATTATACTAGAGACAATCAGTGGAAAAAAGAATAGGGAATATAGTGACTATCATGATCTCGATCTTCTTGGATATGCATGGAGAAAGTGGTGTGAAAGAAAGGCATTGGAGGTGATAGATGAACCTGTAAGCGATTCGATTGTTGTAGCAGAAGCAGAGATATTGAGATGTATACAGATAGGTCTTTTATGTGTTCAAGAGAGAGCTGATGATAGGCCAACTATGTCAGCTGTAATTCTAATGCTGAATGGTGAAAAAACATTGCCTGAGCCAAAGGAACCAGCTTTTTATCCACACCAATTTGGCTCTTCATCAGAAGGAACTATTACACTACATTCAAATAATGAAGTTTCTATAACATTGCTACAAGCAAGATAG	1752	0.3744	MESFNVLVYCFLLFHFIPTFNTLETILPGQSIKGNETLISTDGTVEAGFFNFDNSNNQYFGIWYKDISPRTVVWIANRDSAVENSSGVLNLTDKGTLVIVDDSKGVIVWSSNISTTGANPILQLLENGNLVVKDETKPDTILWKSFDFPGDTLLPGMRIRSSLVKGDSTGLVSWRDTQDPSTGLYSFHIDTNGFPQVVTTRGNTLVNRVGSWNGYSLSGSSSPDLFKSFNITFVITEKEVSYGYELLHNSVFSRHMINSVGQVTRFSLSDDRKSWQILFVGPSDRCDNYAICGANSNCDADNSPICECLDGFIPKSREKWNSQNWTDGCARRVKYEKLLIYEFMINRSLDYLIFDQTRKSLLRWTIRFQIIRGIARGLVYLHEDSRLRIIHRDLKTSNILLDENMNPKISDFGLARTLWGDEAKGETRRVVGTHGYISPEYATRGYFSVKSDVFSFGVIILETISGKKNREYSDYHDLDLLGYAWRKWCERKALEVIDEPVSDSIVVAEAEILRCIQIGLLCVQERADDRPTMSAVILMLNGEKTLPEPKEPAFYPHQFGSSSEGTITLHSNNEVSITLLQAR*	584

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g5697	583	SUPERFAMILY	Protein kinase-like (PK-like)	336	540	IPR011009	-
	Psa5g5697	583	ProSiteProfiles	Protein kinase domain profile.	229	546	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa5g5697	583	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	13	334	-	-
	Psa5g5697	583	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	335	583	-	-
	Psa5g5697	583	SMART	serkin_6	244	540	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa5g5697	583	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	389	401	IPR008271	GO:0004672\|GO:0006468
	Psa5g5697	583	SMART	blect_4	29	149	IPR001480	-
	Psa5g5697	583	Pfam	Protein kinase domain	336	469	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa5g5697	583	Pfam	D-mannose binding lectin	71	175	IPR001480	-
	Psa5g5697	583	Pfam	S-locus glycoprotein domain	208	316	IPR000858	GO:0048544
	Psa5g5697	583	SUPERFAMILY	alpha-D-mannose-specific plant lectins	72	180	IPR036426	-
	Psa5g5697	583	PANTHER	S-LOCUS LECTIN KINASE FAMILY PROTEIN	335	583	-	-
	Psa5g5697	583	PANTHER	S-LOCUS LECTIN KINASE FAMILY PROTEIN	13	334	-	-
	Psa5g5697	583	Gene3D	-	20	146	IPR036426	-
	Psa5g5697	583	Gene3D	Transferase(Phosphotransferase) domain 1	344	550	-	-
	Psa5g5697	583	CDD	EGF_CA	284	316	-	-
	Psa5g5697	583	ProSiteProfiles	Bulb-type lectin domain profile.	23	145	IPR001480	-
	Psa5g5697	583	CDD	B_lectin	30	149	IPR001480	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g5697	Psa-Chr5	495686166	495689121	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g5697	334	576	Receptor kinase-like Gene Family	AT4G23150	50.612	2.46e-75	251

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Psa5g5697		Pkinase	1.1e-27	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g5697	-		-	ccaj:109805721	447.588