Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5681 ATGGCTCCTAACCAACACCATTCACGTTTTAGTTCTAACATGCAGCACTACTACTACAACGACACCGAGGATAGCGACAACAACGACAACGAGATTGTTAACGATAGCGATACGGATATCGACGAGTACGAGTACGAAGAAGAGGAGGAGGAAGATGAAGATGAAGAAGAAGGAGAGATCAAAACCAACAAGAACAACAGCAATGTTGTTTTTGGTGGTTCTTCATTTTCACTGAGCCGGGTATTACTTGACCCGAGAGGAAAATGGGTTGAAGAATGGAACAGAGTATTTCTTTTGGTGTGTGCGATGGGTTTATTTGTGGACCCACTATTTTTCTACGCCCTATCAATAAGTGACACGTGTATGTGTCTGTTTGTAGACGGTTGGTTACTCGTTACCGTCACCGTTATCCGTTGCATGACGGACGCGTTACATCTATGGAATATTTGGTTACAGTTCTATATTCAGAAACGCTCCTCTTTTGGCTTCATTCATAATACTCATCATCATCACCATCATCAAAATTCTTCACATGCTCTTCGTTATTTCAAAGCCAACAAGGGCTTTTTCTTTGACATTTTTGTCCTTCTCCCTCTTCCTCAGATTGTGCTATGGGTGACAATTCCATCTCTGTTAAAGGAAGGGTCAATTACTAAGGTGATGAGTGTATTGTTGATCATGTTTGTGTTTCAATACCTTCCTAAAATTTATCATTCAGTATGCTTTGTGCGTCGCAACCTCTCCGGTTACATTTTCGGAACCGTTTGGTGGGGATTTGCTCTCAACATGATCGCTTATTTTGTTGCTTCTCATGCGGTAGGGGCGTGTTGGTATTTGTTGGGACTTCAAAGGGCGTCAAAGTGTCTAGAAGAGCAATGTGGGAGAACAATGGGTTGTGGATTGAGAACATTGTGTTGCAAGGAACCAATATATTATGGAAGCAGTAGCATGTTGAAGAAATTAGAGAGAACAAGGTTGATATGGGCACAGAACAGAGAAGCAAGGTCTACATGTTTAGCTAGTGCTGATAACTATGACTATGGAGTTTATGAATGGAGTGTTCAACTGGTAACAAATAATAGCCGTTTGGAAAAGATACTACTCCCTATCTTTTGGGGCCTAATGACTCTAAGCACTTTTGGGAACCTCCAGAGCACAACGGAAAGGATGGAAGTCGTTTTCATCATTATTGTATTGACTAGTGGCCTCCTTTTAGTCACTATGCTAATAGGAAACATCAAGGTGTTTTTACATGCTACAACATCGAAGAAACAAGCGATGAAATTAAAAATGACGAACATTGAATGGTGGATGAGCAAAAGACGGTTGCCACATGGGCTCCGGCAGCGTGTGCGCAACTACGAGAGACAGTGCTGGGCCGCGATGCGCGGAGTTGATGAATGTCAGTTGATCAAAATTCTTCCTGAGGGGTTGAGAAGAGACATCAAGTACCATCTTTGTTTAGGTTTGGTGAGACAGGTTCCGCTATTTCAGCATATGGATGAATTGGTGCTAGAGAACATTTGTGACCGTGTCAAGTCCCTTGTATTCACAAAGGGAGAAACACTAACAAGAGAGGGAGAGCCAGTTCAAAGAATGCTATTTGTAGTAAGGGGTCATCTTCAAAGTAGTCAAGTCCTAAGAGATGGAGTAAAAAGTTGTTGCATGTTAGGTCCAGGAAATTTTAGTGGAGATGAGCTTCTATCATGGTGTTTAAGAAGACCTTTTGTACAACGACTTCCAACATCATCATCAACTTTGGTTACACTTGAAACATGCGAGGTATTTGGGCTTGAAGCTGAGGATGTCAAATATGTGACACAACATTTTAGGTACACATTTGCAAAGGAAAATGTTCGGAGAAGTGTAAGATATTACTCACCTGGTTGGAGAACTTGGGCTGCTGTGGCAATTCAGTTGGCTTGGAGAAGGTATAGACATAGATTGACTTTGAGTTCTTTGTCCTTTATTAGGCCTCGTAGGCCTTTGTCAAGGTCCACTTCTTTGGAAGAGGATAGGCTGCGCCTTTATACGGCTTTGTTAACCTCACCAAAGCCCAATCAAGATGATTTTTCATAG 2079 0.419 MAPNQHHSRFSSNMQHYYYNDTEDSDNNDNEIVNDSDTDIDEYEYEEEEEEDEDEEEGEIKTNKNNSNVVFGGSSFSLSRVLLDPRGKWVEEWNRVFLLVCAMGLFVDPLFFYALSISDTCMCLFVDGWLLVTVTVIRCMTDALHLWNIWLQFYIQKRSSFGFIHNTHHHHHHQNSSHALRYFKANKGFFFDIFVLLPLPQIVLWVTIPSLLKEGSITKVMSVLLIMFVFQYLPKIYHSVCFVRRNLSGYIFGTVWWGFALNMIAYFVASHAVGACWYLLGLQRASKCLEEQCGRTMGCGLRTLCCKEPIYYGSSSMLKKLERTRLIWAQNREARSTCLASADNYDYGVYEWSVQLVTNNSRLEKILLPIFWGLMTLSTFGNLQSTTERMEVVFIIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMKLKMTNIEWWMSKRRLPHGLRQRVRNYERQCWAAMRGVDECQLIKILPEGLRRDIKYHLCLGLVRQVPLFQHMDELVLENICDRVKSLVFTKGETLTREGEPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVQRLPTSSSTLVTLETCEVFGLEAEDVKYVTQHFRYTFAKENVRRSVRYYSPGWRTWAAVAIQLAWRRYRHRLTLSSLSFIRPRRPLSRSTSLEEDRLRLYTALLTSPKPNQDDFS* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5681 692 ProSiteProfiles cAMP/cGMP binding motif profile. 496 575 IPR000595 -
Psa5g5681 692 SUPERFAMILY cAMP-binding domain-like 422 610 IPR018490 -
Psa5g5681 692 SUPERFAMILY Voltage-gated potassium channels 84 416 - -
Psa5g5681 692 Coils Coil 33 66 - -
Psa5g5681 692 MobiDBLite consensus disorder prediction 24 58 - -
Psa5g5681 692 SMART cnmp_10 496 622 IPR000595 -
Psa5g5681 692 Gene3D Helix hairpin bin 421 487 - -
Psa5g5681 692 Gene3D Jelly Rolls 494 612 IPR014710 -
Psa5g5681 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 12 690 - -
Psa5g5681 692 MobiDBLite consensus disorder prediction 1 21 - -
Psa5g5681 692 MobiDBLite consensus disorder prediction 1 64 - -
Psa5g5681 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 690 - -
Psa5g5681 692 Pfam Cyclic nucleotide-binding domain 516 604 IPR000595 -
Psa5g5681 692 Pfam Ion transport protein 93 413 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Psa5g5681 692 CDD CAP_ED 496 602 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5681 Psa-Chr5 493295517 493299363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5681 82 691 Ion Channels AT5G54250 75.610 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5681 K05391 - gmx:100800795 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5681 5 493295517 493299363 Psa5g5681 5 493295517 493299363 ECH