Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5675 ATGATGTTATCAGCTTCACCATCTTCTATTGCGAGAAGCTCTTTGGAAGAGATGCTTGAATCTCTTCGCCAGAGAGACGAAAGTGAGAAGCCGAAAGACCTACCGCCGGCATTGCCAGCTAGGCCGATGTCGAGAGGTAGGTTGCCGCCGGCGAGAAGGTCTTTGCCTAAAAGCTTTAAGGTGGAGGGAGATGGTGAGAAATTGGGCCATAGAAGGAAAGGAAGTTTTGGGAACAAGAAGTTAATGTTGGATGTTGAATCTCCTTATGTGTTTGTTTCCGAAGAGAATTGTATTAGTGAACACCCTTCGCCGGGGCCTGTTTCTTCGATTCCGGTGGATGATTCTTCTGTTGCTTCTGTGACTTCACCTTCCCCGGAATTGGAACAGAATGACAATGTTTCTTATTTCATCAAAGAGAAACTTCATGTTTGGTGTAGGCAACCAAAAGGGAAATGGGAACTGGGAAGAATACAGTCAACTTCGGGAGAACAAGCATCTGTTTCACTCTCAAATGGAGTAATTTTGAAAGTGGCTAGAATAGATCTCCTACCGGCTAATCCTGATATTTTAGAGGGTGTGGACGATCTTATACAGCTCAGCTATTTGAACGAACCCTCAGTTCTTCACAATCTTAAGTTTAGATATTCTCAAGATATGATATATAGTAAAGCAGGGCCAATTTTAATTGCACTCAATCCCTTCAAAGATGTACAAATTTACGGAAACGAGTATGTCTCTGCTTATAGAAAGAAGTCTCTTGATAGTCCTCACGTTTATGCCATGGTAAATGCAGCTTATAATGAGATGGTAGGAGATGACGTAAATCAGTCCATTATCATAAGCGGCGAGAGTGGAGCTGGGAAAACGGAAACAGCGAAAATTGCGATGCAATACTTAGCTGCTCTTGGTGGTGGAAGTTGTGGGATAGAAAATGAAGTTCTTCAGACAAATGTTATACTAGAAGCTTTTGGCAATGCAAAAACATCCAGGAATGACAACTCTAGCAGATTTGGGAAGTTGATTGAAATTCATTTCAGCGCAACAGGAAAAATGTGTGGGGCTAAAATTCAAACCTTTCTATTAGAAAAGTCAAGAGTTGTTCAACTGGCTGATGGCGAGAGGTCTTATCACATATTTTATCAACTTTGTGCCGGATCTTCACCTGATATTAAAGCAAGACTAAATCTTAGAGCGGCCGGGGAATATAAGTATCTAAATCAGAGTGACTGCATTACACTTGATGGGGTTGACGAAGCGAAAAAGTTTCATAGGCTGAAGAAAGCATTGGATGTCGTTCAAATGTGCAAAGAGGATCAAGAACGAGCCTTTGAAATGCTTGCTGCGATATTGTGGCTGGGAAATATATCATTCCAAGATAATGATAATGAAAATCGCACTGAAGTGGTGAACGATGAAGCTGTAAGCAATGCTGCTTCCCTGATGGGTTGCAGTTCTCAGGAGCTAATAACAGTATTATCTACACACAAAATTAAAGCTGGCAAGGATACTATCACCAAAACACTGACATTACGACAGGCAATTGATGCAAGAGATGCATTAGCAAAATTCATCTATGCCAACTTATTTGACTGGCTTGTAGAACAAGTTAACAAGTCACTTGAAGTTGGTAAACGACGAACTGGGAGATCCATAAGTATCCTTGATATTTATGGGTTTGAGTCATTCCAGAAAAACAGCTTTGAACAGCTTTGCATAAACTATGCCAACGAGAGGCTTCAGCAACATTTCAATCGGCATCTGTTTAAATTGGAGCAGCAGGACTATGAAATAGATGGCGTTGATTGGACCAAAGTAGATTTTGAAGACAATCAAGAGTGTTTGGATCTCTTTGAAAAGAAGCCTATAGGGCTACTCTCTCTGTTGGACGAGGAATCAAATTTCCCAAGGGCCACTGATTTAACACTTGCCAACAAACTTAGGCAGCACCTGCAAGCTAATCCTCGCTTTAAAGGGGAATGGGGAAAGGGTTTCAGTGTTTGTCATTATGCAGGAGAGGTCGTGTATGATACAAATGGCTTTCTAGAAAAGAACAGAGATCCGATGCCTTCTGATTCTATTCAACTACTATCATCATGTAGTTGTGAACTGCTGCAGTCGTTCTCCAAGACGCTTAACCAGTCTCAGAAGCAATCAAATTCTCAGCATGTAGGTGCTTTAGATTCACAAAAGCAGAGTGTTGGCACAAAGTTCAAGGGTCAATTATTCAAGTTGATGCATCAGTTGGAGAGCACGACACCTCACTTTATTCGCTGTATAAAGCCAAATGCAAAGCAACTTCCTGGCATATATGATGAAGATCTTGTTATCCAGCAGCTCAAGTGTTGTGGAGTTTTGGAGGTTGTTAGGATTTCAAGGGCCGGATATCCTACTCGAATGACACATCAAGAGTTTGCTGAAAGGTATTGCTTTCTGCTCCATGAGGCTTACACATCTCAAGATCCGTTGAGTGTCTCGGTTGCTGTTTTGCAACAATTTAATATCCCTCCTGAAATGTACCAAGTTGGCTTCACCAAACTGTATCTTCGAACAGGGCAGGTTGGTGCACTCGAGGATAAGAGAAAACATGTTTTGCAGGGTATACTTGAGGTTCAAAAATGTGCTCGCGGTCATCAAGCTCGCATTCATTACAATAAACTTAAGAATGGAGTGACAACTTTACAATCATTTGTTCGTGGAGAAATTGCGAGAAGGAAATATGGTGTTATGGTGAAGTCTATAACTATTTCTTCTGAAAATATTGAGGAAATACAGGCTATCATAACACTACAATCTGTAATCCGTGGGTGGCTGGTTCGAAAGCATGATAGTAGATTTAATAAGTTCAGGAAATATCTTGAGAATGGAAAATCTAGGCGAAGATCGCGATCGCGTTCGAAGATTCCAGAAGACAAGGATGCATTGAAAGATCGGGTCCAAAACCTGCCTTCGGCTTTAGCAGAACTCCAAAAGCGGGTTGCCAAGGCCGAAGCAACTATAGAGCAAAAAGAAGAGGAAAACACCGAGTTGAGGGAACAGCTAAAACAATTTGAGAAAAGGTGGATTGAATACGAGAAGAAGATGAAAACAATGGAGGAAATGTGGCAAAGACAAATGTCATCTTTGCAAATGAGTCTTGCTGCAGCTAGAACCAGCCTTGCATCTGAGAATGTGAATGGTCAACCTTCAAGACATGATGTTGCATCACCGTTGCCTTTCTGTTATGATTCTGAGGACGCCACATCGATGGATTCTCGAACGCCTCGAACCCCCGGTTGCAGCACACCTTTGAAATATTCCACCAGTCTTTCTGATGCCAAAGCAACACTGAGAGATGGTCATGGTACTTTAAGCAGTCTGATGACAGAGTTCGAGCAGCGCAGACAGACATTCGATGACGATGCAAGAGCTTTGGTTGAGGTTAAATCAATAGGGCATTCTTCGCATTCGAGTTCCATTGATGAACTGCGGAAACTCAAACACGTGTTTGAAGGGTGGAAGAAAGATTACAAGACTAGATTAAGGGAGACAAAAGCAAAAATAAAATTAGGGAATTCGGAAATGGAAAAAAATCGGCGAAAATGGTGGGGGAAATTGAGCTATAGAGCACTATAA 3612 0.4167 MMLSASPSSIARSSLEEMLESLRQRDESEKPKDLPPALPARPMSRGRLPPARRSLPKSFKVEGDGEKLGHRRKGSFGNKKLMLDVESPYVFVSEENCISEHPSPGPVSSIPVDDSSVASVTSPSPELEQNDNVSYFIKEKLHVWCRQPKGKWELGRIQSTSGEQASVSLSNGVILKVARIDLLPANPDILEGVDDLIQLSYLNEPSVLHNLKFRYSQDMIYSKAGPILIALNPFKDVQIYGNEYVSAYRKKSLDSPHVYAMVNAAYNEMVGDDVNQSIIISGESGAGKTETAKIAMQYLAALGGGSCGIENEVLQTNVILEAFGNAKTSRNDNSSRFGKLIEIHFSATGKMCGAKIQTFLLEKSRVVQLADGERSYHIFYQLCAGSSPDIKARLNLRAAGEYKYLNQSDCITLDGVDEAKKFHRLKKALDVVQMCKEDQERAFEMLAAILWLGNISFQDNDNENRTEVVNDEAVSNAASLMGCSSQELITVLSTHKIKAGKDTITKTLTLRQAIDARDALAKFIYANLFDWLVEQVNKSLEVGKRRTGRSISILDIYGFESFQKNSFEQLCINYANERLQQHFNRHLFKLEQQDYEIDGVDWTKVDFEDNQECLDLFEKKPIGLLSLLDEESNFPRATDLTLANKLRQHLQANPRFKGEWGKGFSVCHYAGEVVYDTNGFLEKNRDPMPSDSIQLLSSCSCELLQSFSKTLNQSQKQSNSQHVGALDSQKQSVGTKFKGQLFKLMHQLESTTPHFIRCIKPNAKQLPGIYDEDLVIQQLKCCGVLEVVRISRAGYPTRMTHQEFAERYCFLLHEAYTSQDPLSVSVAVLQQFNIPPEMYQVGFTKLYLRTGQVGALEDKRKHVLQGILEVQKCARGHQARIHYNKLKNGVTTLQSFVRGEIARRKYGVMVKSITISSENIEEIQAIITLQSVIRGWLVRKHDSRFNKFRKYLENGKSRRRSRSRSKIPEDKDALKDRVQNLPSALAELQKRVAKAEATIEQKEEENTELREQLKQFEKRWIEYEKKMKTMEEMWQRQMSSLQMSLAAARTSLASENVNGQPSRHDVASPLPFCYDSEDATSMDSRTPRTPGCSTPLKYSTSLSDAKATLRDGHGTLSSLMTEFEQRRQTFDDDARALVEVKSIGHSSHSSSIDELRKLKHVFEGWKKDYKTRLRETKAKIKLGNSEMEKNRRKWWGKLSYRAL* 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5675 1203 ProSiteProfiles Myosin motor domain profile. 191 861 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa5g5675 1203 Gene3D - 917 1059 - -
Psa5g5675 1203 ProSiteProfiles IQ motif profile. 886 914 IPR000048 GO:0005515
Psa5g5675 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 912 IPR027417 -
Psa5g5675 1203 SMART MYSc_2a 185 862 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa5g5675 1203 Gene3D - 374 430 - -
Psa5g5675 1203 Gene3D Myosin VI head, motor domain, U50 subdomain 431 539 - -
Psa5g5675 1203 Gene3D Kinesin motor domain 190 794 IPR036961 -
Psa5g5675 1203 Pfam IQ calmodulin-binding motif 890 906 IPR000048 GO:0005515
Psa5g5675 1203 Pfam IQ calmodulin-binding motif 924 941 IPR000048 GO:0005515
Psa5g5675 1203 ProSiteProfiles IQ motif profile. 922 950 IPR000048 GO:0005515
Psa5g5675 1203 ProSiteProfiles IQ motif profile. 865 892 IPR000048 GO:0005515
Psa5g5675 1203 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 138 187 IPR004009 GO:0003774|GO:0005524|GO:0016459
Psa5g5675 1203 Gene3D - 867 912 - -
Psa5g5675 1203 MobiDBLite consensus disorder prediction 1 15 - -
Psa5g5675 1203 PANTHER MYOSIN-2 ISOFORM X1 124 1201 - -
Psa5g5675 1203 CDD MYSc_Myo8 205 849 IPR036022 -
Psa5g5675 1203 Coils Coil 971 1033 - -
Psa5g5675 1203 MobiDBLite consensus disorder prediction 57 72 - -
Psa5g5675 1203 Gene3D - 795 862 - -
Psa5g5675 1203 PANTHER MYOSIN 124 1201 - -
Psa5g5675 1203 Gene3D - 562 751 - -
Psa5g5675 1203 MobiDBLite consensus disorder prediction 1 73 - -
Psa5g5675 1203 MobiDBLite consensus disorder prediction 18 34 - -
Psa5g5675 1203 SMART iq_5 885 907 IPR000048 GO:0005515
Psa5g5675 1203 SMART iq_5 862 884 IPR000048 GO:0005515
Psa5g5675 1203 SMART iq_5 921 943 IPR000048 GO:0005515
Psa5g5675 1203 PRINTS Myosin heavy chain signature 221 240 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa5g5675 1203 PRINTS Myosin heavy chain signature 275 300 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa5g5675 1203 PRINTS Myosin heavy chain signature 318 345 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa5g5675 1203 PRINTS Myosin heavy chain signature 550 578 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa5g5675 1203 PRINTS Myosin heavy chain signature 603 631 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa5g5675 1203 Pfam Myosin head (motor domain) 193 849 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5675 Psa-Chr5 492702335 492713806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5675 1 1197 Myosins gene family AT5G54280 61.062 0.0 1516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5675 K10357 - gmx:100819335 1847.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5675 5 492702335 492713806 Psa5g5675 5 492702335 492713806 ECH