Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5664 ATGAACGGAAAGGCCAACGTTACCAAAGAGCTTAACGCCAAGCACAAGAAGATACTGGAAGGACTGCTTAAATTACCCGAGAATCGGGAATGTGCTGACTGCAAATCTAAAGCTCCGAGATGGGCCAGTGTAAATCTTGGCATCTTTATATGCATGCAATGTTCAGGAATACATAGAAGTTTGGGAGTACATATATCAAAGGTTCGTTCTGCAACTCTTGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCATTCAATGGGAAACGATAAAGCCAATAGTTTCTGGGAAGCAGAATTACCTCCAAACTACGACAGGGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTCCAAGGGATGGGAATTCAAGAACACCTTCTGGACTACGGGAAGATAAGTCTCCTTCACAATGGCAGAGGCCTGCAGAAAAAAGTGGACATGAATACGCCACTGTTCCTGAAAATACTTTTGAGGAAAGGAAGAAAATCCAGCCATCAAATGCAGTTCCTGCTACAAGACGTAGGGTTCCTGCTCCTCGCAAAGTACCTGAGCAGGTAACTCCTGCTCCCCAACCTCAAGACACCGAAAAAGTGAAACCAGTACCCCCGCAACAACAAGCTGTAACTTCAAAGCCTTCTATAGACACAGTTCAAAGTACCCCTCCCAAAGTAGACTATGCTACGGACCTTTTCAACATGTTGTCCATGGATGATGCAAATGCAAATGGCTCCAAAGCAGCTGGTGCTACTGCTGATGATAATAACTGGGCAGGCTTCCAGTGTATGTTTGTGTCCTTAAAAAGTAAAAGGAAAAAGGGAAAAATAAATTCTACACAAGCACATTAA 864 0.4329 MNGKANVTKELNAKHKKILEGLLKLPENRECADCKSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNDKANSFWEAELPPNYDRVGIENFIRAKYEEKRWVPRDGNSRTPSGLREDKSPSQWQRPAEKSGHEYATVPENTFEERKKIQPSNAVPATRRRVPAPRKVPEQVTPAPQPQDTEKVKPVPPQQQAVTSKPSIDTVQSTPPKVDYATDLFNMLSMDDANANGSKAAGATADDNNWAGFQCMFVSLKSKRKKGKINSTQAH* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5664 287 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Psa5g5664 287 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Psa5g5664 287 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Psa5g5664 287 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Psa5g5664 287 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Psa5g5664 287 CDD ArfGap 19 117 - -
Psa5g5664 287 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Psa5g5664 287 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 268 IPR044520 GO:0005096
Psa5g5664 287 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Psa5g5664 287 MobiDBLite consensus disorder prediction 124 227 - -
Psa5g5664 287 MobiDBLite consensus disorder prediction 194 227 - -
Psa5g5664 287 PANTHER ARF GTPASE ACTIVATOR 1 268 - -
Psa5g5664 287 SMART arf_gap_3 16 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5664 Psa-Chr5 492401309 492405533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5664 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 7.71e-30 113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5664 5 492401309 492405533 Psa5g5664 5 492401309 492405533 ECH