Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5657 ATGGCGGCAGAGTACGATCTGACACCGCGTATGGCACCAAATCTTGACCGGCATCTAGTCTTTCCTCTGTTAGAGTTTCTTCAAGAGAGACAAATATACAACGATAACCATATCCTGAAAGCTAAGATTGATCTCTTAAACAACACAAACATGGTTGATTATGCCATGGACATTCACAAGACACTCTACCAAACTGAAGATGTGCCTCAGGACATGGTTGAACGCAGGGCCGACGTTGTCGCTCGACTCAAGTCTCTTGAAGACGCTGCTGCTCCTCTTGTTGCGTTTCTTCAAAATGCTGGCGCCGTTCAGGAATTGAAAGCTGATAAACACTATAATCTTCAGATGCTTAATGATAAATACCAGATCGGTCCTGCACAAATAGAGGCTTTATACCAATATGGCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAGCATTGTGCACTAATAGTGAAAGGAGTTTGAGTGCATTGTGGGGAAAGCTGGCAGCTGAAGTATTGATGCAAAACTGGGATGTTGCTCTTGAAGAGCTAAATCGCTTGAAGGAAATAATTGACTCAAAGAATTTTTCATCACCTATAAATCAGGTACAAAGCAGAATATGGTTGATGCATTGGAGTCTGTTCATCTTTTTCAACCATGACAATGGAAGAACACTGATAATTGATCTGTTTAACCAAGACAAGTATCTTAATGCAATCCAAACTAGTGCTCCGCACCTTTTGCGATACTTGGCCACAGCATTTATCGTCAACAAGCGCAGGAGGCCTCAACTCAAAGAGTTTATAAAAGTTATTCAACAAGAGCAGCGTTCATATAAGGACCCCATCACCGAGTTTTTGGCTTGTGTTTACGTCAACTATGACTTTGATGGCGCACAAAAGAAGATGAGGGAGTGTGAAGAAGTAATTCTCAATGACCCCTTCCTTGGTAAACGAGTTGAAGAAAGCAATTTCTCAACTGTACCATTAAGGGATGAGTTCCTTGAAAATGCTAGGCTATTTATTTTTGAGACATACTGCAGAATACACCAACGCATTGACATGGGAGTACTTGCCGAGAAGCTAAATTTGAATTATGAGGAGGCTGAGAGATGGATTGTGAACCTCATACGAGGCTTAAAGCTTGATGCCAAAATTGACTCAACAACTGGAACTGTTATCATGGAACCTAATCATCCAAATGTGTATGAGCAGTTGGTAGACCATTACCAAGGGCCCTTAACGGCCGCACTTACAAGTTGGTCACTCAACTTCTGGAACACGCACAGGGTCAAGCAGCTCGTTAAACTGTTTGTAAATGTGATGATTGAAGACAATCCAGCAGGCAAAGAAGACAAAATAACAAAATTGGAGGGAAGGAATCAATCACGGACAGCTAACAAACGATCCCAGATTTACAGGAGCAAGGAGGAGAGCCATAAGAATATGAGGCTCAACAAAAACAAGTATTCTCGTGTCCTCATAGGAGAACTGCTTACCAATGATTGTTGGGGAATATTTTGGTGGAAACTGTCTCTTTTTTCTTCACTCTGCAAATTTTCTGTACTTGGCCGAATTATTGTACTTGCAATTTTTATTCCATGA 1617 0.4125 MAAEYDLTPRMAPNLDRHLVFPLLEFLQERQIYNDNHILKAKIDLLNNTNMVDYAMDIHKTLYQTEDVPQDMVERRADVVARLKSLEDAAAPLVAFLQNAGAVQELKADKHYNLQMLNDKYQIGPAQIEALYQYGKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEVLMQNWDVALEELNRLKEIIDSKNFSSPINQVQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQLKEFIKVIQQEQRSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEESNFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLAEKLNLNYEEAERWIVNLIRGLKLDAKIDSTTGTVIMEPNHPNVYEQLVDHYQGPLTAALTSWSLNFWNTHRVKQLVKLFVNVMIEDNPAGKEDKITKLEGRNQSRTANKRSQIYRSKEESHKNMRLNKNKYSRVLIGELLTNDCWGIFWWKLSLFSSLCKFSVLGRIIVLAIFIP* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5657 538 ProSiteProfiles PCI domain profile. 220 404 IPR000717 -
Psa5g5657 538 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 3 415 IPR016650 GO:0003743|GO:0005737|GO:0005852
Psa5g5657 538 Pfam eIF3 subunit 6 N terminal domain 6 138 IPR019010 -
Psa5g5657 538 Pfam PCI domain 286 400 IPR000717 -
Psa5g5657 538 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 333 417 - -
Psa5g5657 538 SUPERFAMILY TPR-like 121 194 IPR011990 GO:0005515
Psa5g5657 538 SMART eIF3_N_2 6 138 IPR019010 -
Psa5g5657 538 SMART PINT_4 333 417 IPR000717 -
Psa5g5657 538 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 3 415 - -
Psa5g5657 538 SUPERFAMILY "Winged helix" DNA-binding domain 333 404 IPR036390 -
Psa5g5657 538 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 3 424 IPR016650 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5657 Psa-Chr5 491868671 491877450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5657 5 416 Eukaryotic Initiation Factors Gene Family AT3G57290 84.951 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5657 K03250 - gmx:100797748 787.719