Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5652 ATGGAAAGTACTGATTCTTCGACGAGTTCGCAGCAGCCGAATCTCCCGCCGGGATTCCGATTCCACCCTACTGATGAAGAGCTGGTTGTTCATTATCTCAAGAAAAAAGCAGCTTCTGCTCCTTTGCCTGTAGCCATCATAGCTGAAGTTGATCTCTACAAATTTGATCCATGGGAGCTACCAGCTAAGGCAACGTTTGGAGAGCAAGAGTGGTATTTCTTTAGTCCAAGGGACAGGAAGTATCCGAATGGAGCGAGGCCGAACAGGGCAGCGACATCGGGTTATTGGAAGGCAACTGGTACTGATAAGCCGGTTTTAACATCGGGAGGAACACAAAAAGTTGGTGTGAAGAAAGCTTTGGTTTTCTATGGCGGAAAACCACCAAGAGGAATCAAAACCAATTGGATCATGCATGAGTATAGGCTTGCTGATAATAAGCCTAATAATAGGCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACTCTCTTAGGCTTGACGACTGGGTTTTGTGTCGGATCTACAAGAAAAGCAACACGCATCGATCACCGGTGGAACACGATAGGGAAGATTCAATGGACGACATGATAGGAGGAGTACATCCGTCGATCAACGTGGGTCAAATGAACGCTGCAACGAGATTCCATCATTTTTCAAAGATGTCACCAAGTAGCTACAACAATACATTGTTGGAGAATGATCAAAATCTATTAGAAGGAATGATGATGAACAACAATTTAGGAGGAGGTTCGAATTCCAAAGGAGGAGGAGGAGAGTTGTCTTTTGTGCCAACCATGACAACATCTTCAAATGCTAATTCACCTTCCAAAAGAACACTTTCTTCTCTTTACAATTGGAATGATCATGAAGATGTTGCAGCTCAAGTTGGTACTTCATCATCAAACAAAAGGTTCAATTTAGAAAGTGTTGTGAGAAATGATCATCAAGAGAATGGAACCGTTGCTAACTCTTTTGCTTCTCTTCTTAATAATCTCCCTCAAACACCTTCATTGCATCAACAACAACAACAACAAACAATGTTGGGATCAATACCATATCAAATTCAAGGCATGAATTGGTATGGATGA 1086 0.4236 MESTDSSTSSQQPNLPPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPVEHDREDSMDDMIGGVHPSINVGQMNAATRFHHFSKMSPSSYNNTLLENDQNLLEGMMMNNNLGGGSNSKGGGGELSFVPTMTTSSNANSPSKRTLSSLYNWNDHEDVAAQVGTSSSNKRFNLESVVRNDHQENGTVANSFASLLNNLPQTPSLHQQQQQQTMLGSIPYQIQGMNWYG* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5652 361 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Psa5g5652 361 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Psa5g5652 361 PANTHER NAC TRANSCRIPTION FACTOR 56 1 338 - -
Psa5g5652 361 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Psa5g5652 361 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 338 - -
Psa5g5652 361 SUPERFAMILY NAC domain 6 176 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5652 Psa-Chr5 491537966 491540742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5652 1 360 NAC Transcription Factor Family AT3G15510 53.050 1.38e-120 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa5g5652 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5652 - - gmx:100170710 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5652 5 491537966 491540742 Psa5g5652 5 491537966 491540742 ECH