Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5642 ATGGCAGATATTGAGTCTCAAGCAATTCACAAAGAGACGTTGCATGAAGAAGCACCTGGTGTTTTGCACAAAGGAAAACATCCTGTGATTCTTAAGTTTGATGATGTTGTGTACAAAATCAACGATAAAAGTGGTGGATTATTCAAGAAGAATGAAAAAGTAGAAGAGAAAACAATACTAAAAGGAGTAAACGGTGTTGTTGAACCAGGTGAGATGCTAGCAATGTTAGGTCCATCAGGAAGTGGAAAAACAACACTATTAACGGCCTTAGGAGGAAGACTTGGTGGAAAACTTCATGGGAAAATAACATACAATGGACAACCTTTTTCAAATGTCATAAAAAGAAACACAGGTTTTGTTACACAAGATGATGTTCTTTACCCTCACTTAACAGTAACAGAAACCCTAGTTTTCACAGCACTTCTTAGATTACCAAATACTCTCACAAAACAAGCCAAAGTTGCACTTGCGAAAAACGTTATTGATCAACTTGGATTAACAAAGTGCGAGGATAGCATCGTTGGAAATACTCATCTAAGAGGAGTTTCTGGTGGAGAGAGGAAAAGGGTTAGTATTGGACAAGAATTGCTTATAAACCCTAGTTTGTTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCTACTACAGCGCAGAGAATTGTATCGACTTTGTCGGATTTAGCAAGAGGTGGAAGGACTATTGTGATGACAATTCATCAACCTTCAAGTAGATTATATTATATGTTTCATAAAGTTTTGTTGCTTGCTGAAGGGAATGTTGTGTATTTCGGAAAAGGGTCCGAAGCCATTCAACATTTTTCTAATATTGGTTATGCTCCTGCTATGGCTATGAACCCTTCAGATTTTCTCTTGGATCTTGCAAATGGTATCTACACGGATGACGCGAATCATGACCATATCATAGACAAGCAAAAACTGATTTCAGCATTTAAGAGTAACTCTGATGGACAATTGAAGCTAGAAGCACATCATGAAATCAATGGCTCTGATGGTAGATTTCAAGAGACAGGTTCTGAAAAATGGCCTACTAGCTGGTCACAACAATTCTTTGTATTGTTAAGAAGAGATATTAAAGAGAGAAAATATGAATCATTCTCTGTCCTTAGGATTGGTCAAGTTCTTGTGGTTGCAGTTATTTCAGGACTACTTTGGTTTAAATCTGATACCTCACACATGCAGGATCAGATTGGACTATTATTCTTCATAACAGGCTTTTGGGGATTTTTCCCACTCTTCCAAGCAATCTTCACTTTCCCTCAAGAACTCATGATGCTCGAAAAAGAAAGATCCTCAGGAATGTACCGACTCTCCTCCTACTTCATCTCAAGAATGGTAGCTGACCTACCAATGGAGCTAGTCCTCCCAACAGTCTTCCTTCTCATAACATATTCATGGCAGACTCAAAGAACAGCACTAAACTTCTTCGAAACACTTTTCTCGCTCTTACTGAATGTTTGGTTGCACAAGGACTAG 1494 0.3829 MADIESQAIHKETLHEEAPGVLHKGKHPVILKFDDVVYKINDKSGGLFKKNEKVEEKTILKGVNGVVEPGEMLAMLGPSGSGKTTLLTALGGRLGGKLHGKITYNGQPFSNVIKRNTGFVTQDDVLYPHLTVTETLVFTALLRLPNTLTKQAKVALAKNVIDQLGLTKCEDSIVGNTHLRGVSGGERKRVSIGQELLINPSLLFLDEPTSGLDSTTAQRIVSTLSDLARGGRTIVMTIHQPSSRLYYMFHKVLLLAEGNVVYFGKGSEAIQHFSNIGYAPAMAMNPSDFLLDLANGIYTDDANHDHIIDKQKLISAFKSNSDGQLKLEAHHEINGSDGRFQETGSEKWPTSWSQQFFVLLRRDIKERKYESFSVLRIGQVLVVAVISGLLWFKSDTSHMQDQIGLLFFITGFWGFFPLFQAIFTFPQELMMLEKERSSGMYRLSSYFISRMVADLPMELVLPTVFLLITYSWQTQRTALNFFETLFSLLLNVWLHKD* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5642 497 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 12 494 - -
Psa5g5642 497 Gene3D - 48 277 IPR027417 -
Psa5g5642 497 ProSitePatterns ABC transporters family signature. 182 196 IPR017871 GO:0005524
Psa5g5642 497 Pfam ABC-2 type transporter 354 491 IPR013525 GO:0016020|GO:0140359
Psa5g5642 497 CDD ABCG_EPDR 28 264 - -
Psa5g5642 497 Pfam ABC-2 type transporter 239 306 IPR043926 GO:0140359
Psa5g5642 497 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 31 282 IPR003439 GO:0005524
Psa5g5642 497 SMART AAA_5 69 267 IPR003593 -
Psa5g5642 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 275 IPR027417 -
Psa5g5642 497 Pfam ABC transporter 60 210 IPR003439 GO:0005524
Psa5g5642 497 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 12 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5642 Psa-Chr5 490789395 490791493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5642 67 296 Calmodulin-binding Proteins AT2G36910 28.571 3.33e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5642 K05681 - gmx:100816135 724.161