Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5639 ATGGGAGTTCAAGAAAACGACACTCTTTCACAATTGAGTTTACCACCTGGTTTTCGATTTTACCCAACCGATGAAGAGCTTCTTGTTCAATATCTATGTCGCAAAGTAGCTGGTCATCATTTTTCTCTTCCAATCATTGCTGAAATTGATCTCTACAAATTCGACCCATGGATCCTTCCAAGTAAAGCGATTTTTGGTGAAAAAGAATGGTATTTCTTTAGCCCAAGAGATAGAAAGTACCCAAACGGGACTAGACCCAATAGAGTAGCTGGATCTGGGTATTGGAAAGCTACTGGAACTGATAAGATTATCACAAACGAAGGTAGAAAAGTTGGTATCAAAAAAGCACTTGTTTTCTATATTGGTAAAGCTCCTAAAGGCACCAAAACTAATTGGATTATGCATGAGTATCGTTTACTTGATTCTTCTCGAAACAACGGCGGCACCAAGTTAGATGATTGGGTTCTGTGTCGAATATACAAGAAAAACTCAAGCGCACAAAAAGCGAATCCTAACGGCGTTGTTTCGAGCAGGGAGTACACACAATACAGTAACGGTTCATCTTCGTCTTCTTCTTCCCACATCGATGAAGTTCTGGAATCACTTCCGGAAATTGACGACCGGTGTTTCATGCTGCCACGTGTCAATTCGCTGAGAACGATGCAGCATCGTCAACAGGAAGAAGAGAAGCTGAATCTTCAGAATAGTTTCATGGATTGGTCTAATCCGTCGTCGATTCTGAACACTGTGACGGAGTTTCAAGAAGCGCAAACTCAAGGGATGGTGAATTTTGGTGGTTGTAATGACGTTTATGTCCCTTCTGTATCCACGTTATCGGTACCGGAGAAGAAACCGACGGAGGAGGAGGTTCAGAGTGGGGCGAGAGCGAACCGGGTTGAGGGTTCTGGCTTATTTCAACGCGGTGGTTCGAGTGATTTTACTCAAGGAATGGGGTATTCTTATTCGGTTGACCCGTTTGGTTTTAGATACCCGGTTCAACCGGTTGGATATGGGTTCGGGCAATGA 1026 0.4337 MGVQENDTLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWILPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITNEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSSRNNGGTKLDDWVLCRIYKKNSSAQKANPNGVVSSREYTQYSNGSSSSSSSHIDEVLESLPEIDDRCFMLPRVNSLRTMQHRQQEEEKLNLQNSFMDWSNPSSILNTVTEFQEAQTQGMVNFGGCNDVYVPSVSTLSVPEKKPTEEEVQSGARANRVEGSGLFQRGGSSDFTQGMGYSYSVDPFGFRYPVQPVGYGFGQ* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5639 341 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Psa5g5639 341 MobiDBLite consensus disorder prediction 168 194 - -
Psa5g5639 341 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Psa5g5639 341 PANTHER NAC TRANSCRIPTION FACTOR 56 1 314 - -
Psa5g5639 341 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 314 - -
Psa5g5639 341 SUPERFAMILY NAC domain 9 163 IPR036093 GO:0003677|GO:0006355
Psa5g5639 341 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5639 Psa-Chr5 490576222 490578786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5639 1 329 NAC Transcription Factor Family AT4G27410 56.647 8.58e-120 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa5g5639 NAM 1.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5639 - - mtr:MTR_2g079990 572.007