Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5591 GATCAAGAGGAGCAAAGCCACTGCAACTTACGCCAAAGACACAGAGGGATCCCTCATTACAGAAGGAGCTTGTGGTTACGGAGATCTTCACAAAGCTAGCTACGGAAAGCACAGTGTTGGATTAAGCACAATTTGTTCAACAGAGGGACTACGTGTGGGGCTTGCTACGAGATCAGATGTGTTGACCATATCTTGTGTTGATTATGGTGGCTGGTGTAACTTTCCAAGACAACATTTTGAGTTGTCACAACCTGCATTTTCTGAAATTGCCAAAACAAAAGCCGATATTATTCCGGTTCAGTATAGAAGAGTGAAGTGTGAAACAAGTGGTGAAGTGTTTGCTGTGAAAGTGAAGGGATCTAGAACAGGATGGATACCAATGGCAAGGAATTGGGGAATGAATTGGCACTGCAATGTCAACTTCAACATCAGCCTTTGTCCTTTGAG 447 0.4362 IKRSKATATYAKDTEGSLITEGACGYGDLHKASYGKHSVGLSTICSTEGLRVGLATRSDVLTISCVDYGGWCNFPRQHFELSQPAFSEIAKTKADIIPVQYRRVKCETSGEVFAVKVKGSRTGWIPMARNWGMNWHCNVNFNISLCPL 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5591 148 PANTHER EXPANSIN-A20 66 110 - -
Psa5g5591 148 PANTHER EXPANSIN-A20 5 51 - -
Psa5g5591 148 SMART dpbb_1 9 101 IPR007112 -
Psa5g5591 148 PANTHER EXPANSIN-A20 109 142 - -
Psa5g5591 148 Pfam Expansin C-terminal domain 108 139 IPR007117 -
Psa5g5591 148 Gene3D - 2 100 IPR036908 -
Psa5g5591 148 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 21 111 IPR007112 -
Psa5g5591 148 PANTHER EXPANSIN-A15 66 110 IPR002963 GO:0009664
Psa5g5591 148 PANTHER EXPANSIN-A15 109 142 IPR002963 GO:0009664
Psa5g5591 148 Gene3D - 101 145 IPR036749 -
Psa5g5591 148 SUPERFAMILY PHL pollen allergen 108 140 IPR036749 -
Psa5g5591 148 PANTHER EXPANSIN-A15 5 51 IPR002963 GO:0009664
Psa5g5591 148 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 109 148 IPR007117 -
Psa5g5591 148 SUPERFAMILY Barwin-like endoglucanases 7 113 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5591 Psa-Chr5 488416770 488417544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5591 6 141 Expansin Gene Family AT4G38210 41.398 8.55e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5591 - - gmx:100804002 204.527