Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5581 ATGGGCTGCATGTGTTGCAAGCCTTCTGCAATTGAGGATAGTAATGAGAGTCCGAGGGAGCGTTTGTCGAACAAAGCTGTTGTTGAATCGCGTGTGTCTAGTAGAGGGACTTCCTCGAGGAGGGAGGAAGTGTATAGGGTGAAGGATAGAGGTGATAGTAACAATGATGCAAGGACGGCATTGATTGATAAGCAAGGACAAGGGAATGGGTCGGTTAGAGTTCATGGTGATAATTTTGAAAGGAAGAGGGAGAAAATGGAGTATGTTGTTGCTGCTCAACATCCAGGGATTGGTACTGTTCCGAAAGCTATGGAAGGGGAACATGTTGCGGCTGGATGGCCGTCATGGCTGGCTGCTGTTGCCGGTGAAGCAATCAAGGGATGGCTGCCACGACGTGCAGATTCTTTTGAGAAATTAGATAAAATTGGTCAGGGAACTTATAGTAATGTTTATAGAGCCCGTGATCTTGAACAAAGGAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCCGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTACGTAGGCTTGATCATCCAAATGTCATTAAGCTGGAAGGCTTGGTCACATCAAGGATGTCGTGCAGTTTATACCTTGTGTTTGAGTACATGGAGCATGACTTGGCTGGGCTTGCATCACATCCTGGACTCAAGTTTACAGAATCACAGGTTAAATGTTACATGCAGCAACTTTTACGTGGTCTTGATCACTGCCACAGCCGTGGTGTGCTGCACCGTGACATTAAGGGTTCCAATCTCTTGATTGACAACAATGGAGTATTGAAAATTGCAGACTTTGGTTTGGCGAGCTTTTTTGATCCCAATCTAAATCAGCCACTCACAAGCCGAGTTGTAACTCTTTGGTATAGGCCACCTGAGCTTTTACTTGGAGCTACTTACTATGCCACTGCTGTAGATTTATGGAGTACAGGTTGCATACTTGCCGAGCTGTATGCTGGCAAGCCTATAATGCCTGGTAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTTTGTGGTTCGCCTTCCGAGGACTATTGGAGAAAATCAAAATTGCCTCATGCAACAATATTTAAGCCTCAACAACCCTACAGGCGTTGTGTTGCTGAAACATTCAAGGACTTTCCGGCACCTGCAATAGAACTGATAGAGACACTCTTGTCCATAGACCCTGCTGATCGTGGAACTTCAGCATCTGCTTTGATGAGTGAGTTCTTCTCAATAAAGCCTCTACCATGTGATCCTTCAAGCCTGCCAAAGTATCCTCCTAGCAAAGAATTTGATGCTAAAGTACGGGATGAAGAAGCTAGACGACAAGGGGCAACAGGAAGCAAAGGCCAGAGACATGATCCTGAGAGAAGAGGTGTAAGAGAATCTCGGGCTGTACCTGCACCCGATGCCAATGCTGAACTAGTGGTGTCAATGCAGAAGAGACAAGGTCAGAACTATTCTCAAAGTAGGAGTGAGAAGTTTAACCCTCATCCTGAAGAAGCTGCTTCTGGATTTCCTATTGAACCCCCTAGACCATCACAAGTTGCAGAAGCAAGTGTTGATCCCCAAGCAAATCAACATAAAAGAGCCTCACATTCAGGTCCACTTACTCACCGTGCTGCTTGGGCGAAAGCTGGGAAGAACCAGGATGATGCTCCAAAGATTTCAGTGGGCGGCGACTTATCTACAATCTCGGGCTTAGTTGCAGCCAGGAGGAGTATGCTGTCTGACGATCGTAGAGAAAGTTCTGGATCATCACAAGTGGAGGCTCCAAAACTAATTACTAGGTTCCCAGGTTCCTTCAAAGAGGCCTCTGAATCATTGATGCAACAAAATCAAAATCAGAAGCATCATGTACATGCTTCACAAAAGGAAGAAGCAAAAGGCAACAACAAAGACCCAAATGTTGCTGGTTATGGTTCAAAAGGTTATAAAATTCATTATTCTGGTCCATTGCTAGTTCCATCAAGCAACATGGACCAGATGTTGAAAGACCACGACCGCCAAATTCAAGAAGCGGTCAGAAGAGCACGTCTAGACAAGGCAAAAATGCGAAGACTCCAAGCTGAAGGGAACCAGATAAGCAATTCATTATTTGTTTCCGGCCGTTGA 2145 0.4494 MGCMCCKPSAIEDSNESPRERLSNKAVVESRVSSRGTSSRREEVYRVKDRGDSNNDARTALIDKQGQGNGSVRVHGDNFERKREKMEYVVAAQHPGIGTVPKAMEGEHVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQRKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTESQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPNLNQPLTSRVVTLWYRPPELLLGATYYATAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPAPAIELIETLLSIDPADRGTSASALMSEFFSIKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGATGSKGQRHDPERRGVRESRAVPAPDANAELVVSMQKRQGQNYSQSRSEKFNPHPEEAASGFPIEPPRPSQVAEASVDPQANQHKRASHSGPLTHRAAWAKAGKNQDDAPKISVGGDLSTISGLVAARRSMLSDDRRESSGSSQVEAPKLITRFPGSFKEASESLMQQNQNQKHHVHASQKEEAKGNNKDPNVAGYGSKGYKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRARLDKAKMRRLQAEGNQISNSLFVSGR* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5581 714 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Psa5g5581 714 CDD STKc_CDK9_like 136 420 - -
Psa5g5581 714 Coils Coil 681 701 - -
Psa5g5581 714 PANTHER CELL DIVISION PROTEIN KINASE 1 696 - -
Psa5g5581 714 MobiDBLite consensus disorder prediction 35 57 - -
Psa5g5581 714 MobiDBLite consensus disorder prediction 10 57 - -
Psa5g5581 714 Gene3D Transferase(Phosphotransferase) domain 1 219 459 - -
Psa5g5581 714 MobiDBLite consensus disorder prediction 615 646 - -
Psa5g5581 714 Pfam Protein kinase domain 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5581 714 PANTHER CYCLIN-DEPENDENT KINASE 1 696 - -
Psa5g5581 714 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Psa5g5581 714 SUPERFAMILY Protein kinase-like (PK-like) 130 422 IPR011009 -
Psa5g5581 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Psa5g5581 714 MobiDBLite consensus disorder prediction 440 474 - -
Psa5g5581 714 MobiDBLite consensus disorder prediction 440 568 - -
Psa5g5581 714 MobiDBLite consensus disorder prediction 488 503 - -
Psa5g5581 714 ProSiteProfiles Protein kinase domain profile. 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5581 714 SMART serkin_6 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5581 Psa-Chr5 487295041 487300905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5581 128 452 Core Cell Cycle Gene Families AT5G10270 53.372 3.48e-117 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Psa5g5581 Pkinase 2.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5581 - - gmx:100792173 1260.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5581 5 487295041 487300905 Psa5g5581 5 487295041 487300905 ECH