Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5578 ATGAAAAAAAAGCATTCCTTAAGGCAGTTATTGGATCTTATAGATATGAGTGAGAATGCATTTGGTGTTGTTGGATCTCATTCTCAGACAGTTCCAGTGCTTGTTTCCCTTCTCCAGTCAGGTTCGTTGAATGTGAAGATCCAGGCAGCAACTCTTTTGGGCTCACTTTGTAAAGAAAATGAATTAAATGTGAAAGTTTTGCTTGAAGGATACATTCCTCCTTTGCTCAATCTACTAAAGTCCAGTTCTGAAGAAGGTCAAGTAGCTGCTGCAAAGACAATTTTTGCTGTCTCCCAAGGAGGTACTTCCATAACAAGTTGA 321 0.3925 MKKKHSLRQLLDLIDMSENAFGVVGSHSQTVPVLVSLLQSGSLNVKIQAATLLGSLCKENELNVKVLLEGYIPPLLNLLKSSSEEGQVAAAKTIFAVSQGGTSITS* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5578 106 Gene3D - 3 103 IPR011989 -
Psa5g5578 106 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 2 102 - -
Psa5g5578 106 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 2 102 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Psa5g5578 106 Pfam Armadillo/beta-catenin-like repeat 28 57 IPR000225 GO:0005515
Psa5g5578 106 SUPERFAMILY ARM repeat 5 100 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5578 Psa-Chr5 487089498 487089818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5578 3 95 U-box Gene Family AT2G28830 36.559 1.39e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5578 - - gmx:100816765 159.458