Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5566 ATGGAGAAGAAGTCACTAGCTTGCTTGTCCTTCCTCCTCCTCGTTCTCTTTGTTGCACAAGAAATAGTGGTGAGTGAAGCAAACACATGTGAGAATTTGGCTGGTTCATATAAGGGAGTATGCTTCGGTGGATGTGACCGTCACTGTAGAACACAAGAGGGCGCAATTAGCGGCAGATGCAGGGATGACTTTCGCTGTTGGTGCACTAAAAACTGTTAA 219 0.4612 MEKKSLACLSFLLLVLFVAQEIVVSEANTCENLAGSYKGVCFGGCDRHCRTQEGAISGRCRDDFRCWCTKNC* 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5566 72 PANTHER DEFENSIN 1 72 - -
Psa5g5566 72 Pfam Gamma-thionin family 29 72 - -
Psa5g5566 72 Gene3D - 28 72 IPR036574 -
Psa5g5566 72 PANTHER DEFENSIN-LIKE PROTEIN 1 1 72 - -
Psa5g5566 72 SUPERFAMILY Scorpion toxin-like 32 70 IPR036574 -
Psa5g5566 72 SMART gth_4 29 72 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5566 Psa-Chr5 486592051 486592914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5566 1 72 Plant Defensins Gene Families AT5G63660 42.667 1.91e-08 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5566 - K06233 gmx:100779239 102.834