Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5565 ATGGAGAAGAAATCACTAGCTGCCTTGTCCTTCCTCCTCCTCGTTCTCTTTGTTGCACAAGAAATTGTGGTGACAGAGGCAAACACTTGTGAGCATTTGGCTGATACATACAGGGGAGTATGCTTCACGAATGCTAGCTGTGATGATCACTGCAAGAACAAAGCACACTTAATCAGTGGCACTTGCCATGACTGGAAATGTTTCTGCACTCAAAACTGTTAA 222 0.4414 MEKKSLAALSFLLLVLFVAQEIVVTEANTCEHLADTYRGVCFTNASCDDHCKNKAHLISGTCHDWKCFCTQNC* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5565 73 Gene3D - 28 73 IPR036574 -
Psa5g5565 73 SMART gth_4 29 73 IPR003614 GO:0006952
Psa5g5565 73 Pfam Gamma-thionin family 29 73 - -
Psa5g5565 73 PANTHER DEFENSIN 1 73 - -
Psa5g5565 73 PANTHER DEFENSIN-LIKE PROTEIN 1 1 73 - -
Psa5g5565 73 SUPERFAMILY Scorpion toxin-like 29 73 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5565 Psa-Chr5 486589546 486589923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5565 1 73 Plant Defensins Gene Families AT5G63660 40.000 6.93e-12 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5565 - - gmx:100779239 110.538