Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5564 ATGGAGGATAATTCTGAGAGTTCTAGGGCTTTGAATAGTTCTGGAGTTTCAGATAGGAATCAAAGGCAAAACCGTTTTTCCGGCGAGGGATCGGAGGATTCTAGGTTTAGAAAGGAAAGAGATTGGATTCATGGTGCACAGCAAGTTGATCTAAACAAAACCTTAGGAGGGTTTTGTGAGGATGAAGTTGAGAATGACCCTTTCATTTCTTCGGTAGAATGGGATGATATTAGCTTGAGGCAGTGGTTGGATAAGCCCGATCGATCGGTTGATTTCTTCGAGTGCTTGCATGTGTTTAGACAAATAGTAGAAATCGTTAATGCGGCACATTGTCAAGGTGTTGTTGTTCATAACGTGAGGCCTTCATGCTTTGTCATGTCGTCTTTCAACCATATCTCGTTTATTGAATCGGCTTCTTGTTCGGATACTGGTTCGGATTCTTTAGGAGATGGAATGAATGGCGAACAAGGTGTTGAGGTTAAGACTCCGACGTCTCACTGTCCTCGTGATATTATGCATCCGCAGAGTTTAGGAGGTGAAGAGTTTTTGCCTGCCAAGATTTCGACGGCTGCTCGGTCTGATTCTAGTTGCATGCTGTCAAGTGCTGTGTATGCAGCTCGTGCGTCGTTAATAGAAGAAACAGAAGAGAATAAAATGAAAGATAGGAGGAAGGATGAAGAAGTGGAAGTAAAGAAGCAATCGTTTCCGATGAAACAAATACTGCAAATGGAGATGAGTTGGTACACTAGTCCTGAAGAGGTTGCCGGTACTCCGAGTTCATGTGCTTCGGATGTTTACAGATTAGGGATTCTTCTATTCGAGCTATTCTGTCCATTGAGCTCAAGAGAAGAGAAAAGTAGAACAATGTCTAGTCTTAGGCATAGAGTTCTTCCTCCGCAGTTACTTCTAAAATGGCCTAAGGAAGCTTCGTTTTGCTTATGGTTACTACATCCCGACCCTAGCAGTCGTCCAACACTAGGTGAGTTGTTGCAAAGCGAGTTCCTTAATGAACAGCGCGATGATATGGAAGAACGTGAAGCAGCAATAGAGATTAGACAAAAGATAGAAGATCAGGAGTTGTTACTCGAATTCCTTGCGTTACTTAGACAAAGAAAACAGGAAGTTGCTGAAAAACTGCAACACACTATCTCTTTTCTGTCTTCAGATATCGAAGAAGTGGCCAAGAAGCAAACTAGGTTTAAAGAGATTTCCGGTGTTGAACTAGGGAGCGACGATCGTTCAGCATCAACATTTCCATCCATGACAGTTATCGATAGCGAAGATTCTGCATGTTTAGGAACTAGAAAACGAGTCAGATTAGGGGTGCATGTTGATGAATGTGACGATAACACGGGGAATGATCAGAGAAATCCGGGAAGTTTTCTTTCAAAAAGTTCACGACTAATGAAAAACTTCAAGAAACTCGAGTCAGCGTACTTTTTAACGCGATGCAAACCAACATATTCCTTGGGGAGACAGGCGGTTAGACATTCATCTATAGCAAATGATGGGAGAGGATCTGTTGTCATAAATGAAAGAAGTAGCATCAATAACTTGGCCTTGAAAGAGAAAGGAAGGGACGGCGGTGCAAGTGGTTGGATAAACCCTTTCCTCGAGGGTTTGTGCAAGTACTTATCTTTCAGTAAGGTCAAGGTAAAAGCTGACCTAAAGCAAGGAGATCTTTTGCATTCGTCCAACCTAGTATGCTCGCTCAGTTTCGATCGCGACGGAGAATTTTTCGCAACCGCCGGTGTGAATAAAAAAATCAAAATATTTGAATGTGATACAATCATAAACGAGGATCGTGATATCCACTATCCGGTAGTAGAGATGGCTTGCAGGTCAAAGTTGAGCAGTTTATGTTGGAATACATACATCAAAAGTCAAATTGCTTCTAGTAACTTTGAAGGTGTTGTACAGTTATGGGACGTTACGAGAAGTCAAGTACTATCTGAAATGAGGGAGCACGAGCGGCGAGTGTGGTCGATTGATTTCTCATCAGCAGATCCAACAATGTTGGCAAGTGGAAGCGACGACGGTTGCGTTAAGCTATGGAGTATCAATCAGGGAGTTAGTATCGGCACCATCAAAACAAAGGCGAACGTATGCTGTGTTCAGTTTCCTCTCGATTCCGCTCGCTACCTTGCATTTGGTTCCGCGGATCACCGGATATATTACTACGATCTACGCAATTTAAGAGCACCGCTTTGTACTTTAGTCGGACATAATAAGACAGTGAGCTACATCAAGTTTGTAGACAATGTCAACCTTGTCTCCGCGTCCACAGACAACACTTTGAAGCTTTGGGATTTGTCTACGTGTACATCTCGAGTTATCGACTCGCCGATTCAATCGTTCACTGGTCACACGAATGTTAAGAACTTCGTGGGATTATCGGTATCGGATGGTTATATTGCAACTGGTTCAGAGACAAATGAGGTGTTTATATATCACAAGGCCTTCCCTATGCCAGCATTGCAATTCAAGTTTCAGAACACAGATCCGATATCCGGCCACGAAGTGGACGATGCGGCACAGTTTGTCTCCTCGGTTTGTTGGCGTGGTCAGTCGCCAACATTAATCGCGGCAAACTCGACAGGGAATGTTAAGATTCTGGAGATGGTTTGA 2628 0.4323 MEDNSESSRALNSSGVSDRNQRQNRFSGEGSEDSRFRKERDWIHGAQQVDLNKTLGGFCEDEVENDPFISSVEWDDISLRQWLDKPDRSVDFFECLHVFRQIVEIVNAAHCQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGDGMNGEQGVEVKTPTSHCPRDIMHPQSLGGEEFLPAKISTAARSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEVKKQSFPMKQILQMEMSWYTSPEEVAGTPSSCASDVYRLGILLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIEIRQKIEDQELLLEFLALLRQRKQEVAEKLQHTISFLSSDIEEVAKKQTRFKEISGVELGSDDRSASTFPSMTVIDSEDSACLGTRKRVRLGVHVDECDDNTGNDQRNPGSFLSKSSRLMKNFKKLESAYFLTRCKPTYSLGRQAVRHSSIANDGRGSVVINERSSINNLALKEKGRDGGASGWINPFLEGLCKYLSFSKVKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKIFECDTIINEDRDIHYPVVEMACRSKLSSLCWNTYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGCVKLWSINQGVSIGTIKTKANVCCVQFPLDSARYLAFGSADHRIYYYDLRNLRAPLCTLVGHNKTVSYIKFVDNVNLVSASTDNTLKLWDLSTCTSRVIDSPIQSFTGHTNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALQFKFQNTDPISGHEVDDAAQFVSSVCWRGQSPTLIAANSTGNVKILEMV* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5564 875 Pfam WD domain, G-beta repeat 563 592 IPR001680 GO:0005515
Psa5g5564 875 Pfam WD domain, G-beta repeat 649 686 IPR001680 GO:0005515
Psa5g5564 875 Pfam WD domain, G-beta repeat 735 770 IPR001680 GO:0005515
Psa5g5564 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 739 773 IPR001680 GO:0005515
Psa5g5564 875 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 653 690 - -
Psa5g5564 875 MobiDBLite consensus disorder prediction 1 37 - -
Psa5g5564 875 Gene3D - 539 875 IPR015943 GO:0005515
Psa5g5564 875 Gene3D Transferase(Phosphotransferase) domain 1 75 348 - -
Psa5g5564 875 ProSiteProfiles Protein kinase domain profile. 1 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5564 875 PANTHER PROTEIN SPA1-RELATED 2 3 875 IPR044630 GO:0009640
Psa5g5564 875 SUPERFAMILY Protein kinase-like (PK-like) 68 337 IPR011009 -
Psa5g5564 875 ProSitePatterns Trp-Asp (WD) repeats signature. 757 771 IPR019775 -
Psa5g5564 875 CDD WD40 568 871 - -
Psa5g5564 875 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 739 773 - -
Psa5g5564 875 PANTHER PROTEIN SPA1-RELATED 3 3 875 - -
Psa5g5564 875 SUPERFAMILY WD40 repeat-like 563 872 IPR036322 GO:0005515
Psa5g5564 875 SMART serkin_6 16 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5564 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 653 695 IPR001680 GO:0005515
Psa5g5564 875 Coils Coil 376 396 - -
Psa5g5564 875 Coils Coil 332 352 - -
Psa5g5564 875 PRINTS G protein beta WD-40 repeat signature 630 644 IPR020472 -
Psa5g5564 875 PRINTS G protein beta WD-40 repeat signature 673 687 IPR020472 -
Psa5g5564 875 PRINTS G protein beta WD-40 repeat signature 757 771 IPR020472 -
Psa5g5564 875 SMART WD40_4 689 728 IPR001680 GO:0005515
Psa5g5564 875 SMART WD40_4 607 643 IPR001680 GO:0005515
Psa5g5564 875 SMART WD40_4 829 873 IPR001680 GO:0005515
Psa5g5564 875 SMART WD40_4 646 686 IPR001680 GO:0005515
Psa5g5564 875 SMART WD40_4 558 593 IPR001680 GO:0005515
Psa5g5564 875 SMART WD40_4 732 770 IPR001680 GO:0005515
Psa5g5564 875 SMART WD40_4 779 818 IPR001680 GO:0005515
Psa5g5564 875 MobiDBLite consensus disorder prediction 7 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5564 Psa-Chr5 486459305 486464270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5564 643 817 Miscellaneous Gene Families AT5G08390 24.859 6.52e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Psa5g5564 WD40 0.00025 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5564 - - gmx:100811457 1476.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5564 5 486459305 486464270 Psa5g5564 5 486459305 486464270 ECH