Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5558 ATGGAGGCTAAGAGTACTATGGAGATGAACCAAACATCACTTGAGAAAGTGTGGAAAAACGACATAGCTGAAGAAATAGAAGATGAAGAAAAGGAAGAGGATGACAGTGTTGAGAAAGATGAGAAAAAGAAAAGTGTTTGTGTGAGTGGGAGAAAAGGGTCAAATAGAGGAGGAAGATATTTTCCACCTACATGTCAAGCAGAAACTTGCGAAGCTGATTTAACTTTTGCAAAGAGGTATCATCGTCGCCATAAGGTTTGTGAGGTTCATTCCAAGGCACCTGCTGTGGTGGTTGCTGGACTCAGCCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTTGCAGAGTTTGATGAAGCTAAAAGAAGTTGTCGTAGGCGCTTAGCAAGACACAACGAACGACGTCGTAAAAACTCTGCTGGAACTTACAATGAAGGAAGCAGTACTGGTCAGCAACATGATGTTGGTGACTGGACAAAAATTCATATGAGCATTACAGGGAGTTCTGGTCACGAGTATTTGAATTTCAGATGA 537 0.4246 MEAKSTMEMNQTSLEKVWKNDIAEEIEDEEKEEDDSVEKDEKKKSVCVSGRKGSNRGGRYFPPTCQAETCEADLTFAKRYHRRHKVCEVHSKAPAVVVAGLSQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKNSAGTYNEGSSTGQQHDVGDWTKIHMSITGSSGHEYLNFR* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5558 178 Coils Coil 19 43 - -
Psa5g5558 178 Gene3D - 57 126 IPR036893 GO:0003677|GO:0005634
Psa5g5558 178 Coils Coil 115 135 - -
Psa5g5558 178 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Psa5g5558 178 SUPERFAMILY SBT domain 63 143 IPR036893 GO:0003677|GO:0005634
Psa5g5558 178 Pfam SBP domain 65 138 IPR004333 GO:0003677
Psa5g5558 178 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 153 IPR044817 GO:0003677
Psa5g5558 178 MobiDBLite consensus disorder prediction 1 17 - -
Psa5g5558 178 MobiDBLite consensus disorder prediction 142 156 - -
Psa5g5558 178 MobiDBLite consensus disorder prediction 1 49 - -
Psa5g5558 178 MobiDBLite consensus disorder prediction 132 157 - -
Psa5g5558 178 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5558 Psa-Chr5 484972433 484974021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5558 48 148 SBP-box Gene Family AT1G53160 67.961 7.45e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa5g5558 SBP 9.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5558 - - mtr:MTR_2g078770 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5558 5 484972433 484974021 Psa1g4661 1 354241845 354244004 ECH
Psa5g5558 5 484972433 484974021 Psa5g5558 5 484972433 484974021 ECH