Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5555 ATGGTGGGCTCAGGAGCAACATCTGATAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAACCGTCTGTCTTAACTCTGACTGGACTTATTCTGTCTTCTGGACTATTCGTCCTCGCCCTAGAGTTCGAGGTGGTAATGGCTGCAAGGTTGGCGATGATAACGGTAGCTTGATGTTGATGTGGGAAGATGGATTTTGTAGAGGAAGAGGTTCATCATCAGGTTGTGTTGAAGATATTGATGGAGAAGATCTTGTTAGAAAAGCTTTCAGCAAAATGTCCATTCAGTTGTATAATTATGGAGAAGGGTTGATGGGGAAAGTTGCATCTGATAAGTGTCACAAATGGGTCTTTAAAGAGCCAACAGAATGTGAACCTAACATCTCTAACTACTGGCAGAGTTCATTTGATGCTCTTCCTCCTGAATGGACAGACCAATTTGAGTCAGGCATTCAGACCATTGCTGTAATCCAAGCTGGCCATGGTCTTCTTCAACTTGGTTCTTGCAAGATTATTCCCGAGGATCTTCATTTTGTCCTAAGAATGAGGCACACATTTGAATCATTAGGCTACCAATCTGGTTTCTATCTCTCACAGCTTTTCTCATCAACGAGGAACACTTCTTCATCAGCTTCACTTCCTTCAAAACCATCTTCCACCACTCTTCCAATTAGGCCACCTCCACCACTCTTCAACTGGGGTCAGAGACCACTGACCTCTCCTTCATCCATGCTATCCTCACCCAACTTCCAACAACATGCAGCTAGGCTTGGTTTTCCACAAACCAAAGATGAAACACACATGTTTCTCATGCCTCATGCATCATCATCACATGATCAAACTCCAAGAATTGAAGACATGATGGGAGGAGAACATCATGAAAATGACATTAAATGGCCAAATGGTTTGTCTTTCTTTAATGCGTTAACCGGTAGAGCTGATGATGCTAAGCTTTTGTTTAATCCAGAGAGCTTAGGAGGAAAACAAAGCGATCATGATCATGATCATAATCATAATCATAATCAAAATCAAAATCATCATCACACTCTTAATCAAAATCCTAACTCAGATGGTTCAAACCCAAATGAGTTTTTGAGCTTGGATAGTCACCATGATGGTGGAAGGAAAATGGACAAGTTTAAGAGAAGTTTCACTTTACCTACAAGAGTTGCTTCATCATCTTCATCTACTTCAATGGATCATCATCAACAACAACAAGGTGTGGAGTATAGGAATTCAGAAGGTGGTATGTACTCAGATGTTATGGAGACCTTTTTGGAGTGA 1296 0.4167 MVGSGATSDRSKEAVGMMALHEALRTVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGRGSSSGCVEDIDGEDLVRKAFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNTSSSASLPSKPSSTTLPIRPPPPLFNWGQRPLTSPSSMLSSPNFQQHAARLGFPQTKDETHMFLMPHASSSHDQTPRIEDMMGGEHHENDIKWPNGLSFFNALTGRADDAKLLFNPESLGGKQSDHDHDHNHNHNQNQNHHHTLNQNPNSDGSNPNEFLSLDSHHDGGRKMDKFKRSFTLPTRVASSSSSTSMDHHQQQQGVEYRNSEGGMYSDVMETFLE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5555 431 PANTHER GB|AAF34833.1 1 431 IPR044170 -
Psa5g5555 431 PANTHER GB|AAF34833.1 1 431 - -
Psa5g5555 431 MobiDBLite consensus disorder prediction 391 420 - -
Psa5g5555 431 MobiDBLite consensus disorder prediction 391 416 - -
Psa5g5555 431 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 20 190 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5555 Psa-Chr5 484209907 484212820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5555 21 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 31.527 1.01e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5555 - - gmx:100814723 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5555 5 484209907 484212820 Psa5g5555 5 484209907 484212820 ECH