Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5554 ATGGTGTTACCAAGATGTTTCTGGTTGAGACTCTTTCAGTTTTGTGTCTTGTCTTCCTTACTTTGTTTATCTCTGAGTCTTGATACTAGAACTCAATCTTGTGATCCTGGTGATTTATCAGCTCTGAAAGAGTTTGCAGGAAACCTTACAAATGGTTCCATTGTCAAACTATGGTCCAATGATAGTGTTTGCTGCAAATGGATTGGAGTTGTGTGTGGTGGTGATGATAATGGAGAATCTGTTACTAGAGTGACAAAATTGATCCTTTCTGAGATGAGTCTCAATGGAACAATTTCACCTTCTTTAGCAAAACTAGAATATCTCACTGTGTTGAACCTTTCATTCAATCATCTAGAAGGTAAATTGCCTCAAGAGTTATCAAAGTTAAAGAAGTTGAAGTTTCTTGATTTGAGCTATAACATGTTGTTAGGACCTGTTGCTGAGTCACTTTCTGGTTTGTCTTCCATTGAAGTGTTGAATATTTCAAGTAATTCATTTTCTGGAAACTTCTTGTTGTTTCACTCTGTGGAGTTTACACATCTTCTTGCTCTCAATGTGAGTAACAATTCATTCACTGGTAAATTCAGTTCTCAAATTTGCAATTCTTCAAAGGCTTTTCACACACTTGATTTATCTTTGAACCATTTTGATGGTGATCTTGAAGGTTTGAGCAACTGCACTTTGTCTCTCAAAAGGTTGCATTTGGATTCCAATTCATTTTCTGGCCATTTACCAGATTCATTGTATTCAATGTTAGCCTTGGAACAATTATCACTCTCTGCCAACAATTTTTCTGGCAAGTTAAGCAATGAGTTAAGTAAGCTTACTAGTCTAAAATCTCTTGTGGTTTCTGTGAACCGATTTTCGGGCGAAATCCCGAATGTTTTTGAGAATCTTTTGCAGTTAGAGCAATTAGTAGCACATGCTAACTCATTTTCTGGACCATTACCTTCCACTTTGGCTTTATGCTCTAAGCTTATAGTGCTTGATCTTAAAAATAACTCTTTGTCGGGTTCAATCGATCTTAATTTCACCGGTTTGACTAGTATTCGTTCGCTTGACCTTGCTAGTAATCATTTAACCGGTCCACTTCCCAGTTCCTTGTCCTTCTGCCGTGAATTGAAAGTTTTAAGCCTTGCTAGGAATGGTTTAAATGGTTCTATACCTGAAAGTTATGCCGAATTATCTTCTCTTTTGTTTGTATCTTTTTCAAACAACAGCTTAGAGAATTTATCTGGTGCACTTTCTGTTCTTCAGAAATGCAAAAATCTCACTACTCTTATCCTTACCAAGAATTTCCACGGCGAGGAAATTCCACAGAGTGTGCCAACAGCAGGATTTCAGAGTCTCATGGTGCTAGCACTCGGAAACTGTGGTCTTAAAAATCATATTCCTTCTTGGCTATTAAAATGCAGGAAATTGGCTGTACTTGATTTGTCTTGGAACTCTTTGAATGGTAGCATTCCTTCATGGATTGGTGAAATGGACGGTTTGTTCTATTTGGATTTCTCAAATAATTCTCTCATGGGAGAAATACCGAAAAGTTTGACAGAGATGAAGGGACTCCTGTGCTCAAATTGTGGAAGACCGAATCTCGCTTCGAATGCTTTCATTCCGCTATTTGTTAAAAGAAACACTAGTGCTAGTGGTTTGCAATATAATCAGGCTTCAAGTTTCCCTCCTTCGATTTTATTGAGCAATAACATGTTAAGTGGAAGCATATGGCCAGAAATTGGAAACTTGAAGGCACTTCATGTGTTGGATTTCAGCAGGAACAACATCAGTGGTAGCATTCCGAGTACTATTTCAGAGATGGAGAATCTGGAAACATTGGATTTGTCTTATAATGATCTATCTGGTACAATCCCTCCCACATTTAACAACCTAACATTCTTGTCGAAATTTAGTGTGGCGCATAATCACTTACAAGGACCGATTCCGAGCGGAGGGCAGTTTTTAAGCTTCCCTAGTTCAAGCTTTGAGGGTAATTTGGGACTTTGCAGGGATAATGATATTGATAATGCTACTCCTTGCAAGATTGTTAACAATATGAGGCCTAGTTTGTCTTCTGGTTCGTCGAGAAAATTTAGTAGAGGCAATGTTCTTGGCATAACAATCAGCATCGGGGTAGGTCTTGCATTGCTTCTTGCAATTGTCGTGGTAAGAATGTCGAAGAGGCCAGAAGATAAAACTATCGGTAGCTTTGACGAAGAGATGAATAGTAGGCCACAAAGGTTATTATCAGCGGAAGCACTTGTTTCCTCCAAATTGGTGCTTTTTCAGAATGCAGATTGCAAGGATCTCACAGTTTCTGATTTGTTAAAAGCAACGAACAATTTCAACCAGTCGAATATTGTTGGTTGTGGCGGCTTCGGTCTTGTTTACAAGGCTTATCTTCCGAACGGCACAAAAGCGGCTGTCAAAAGGCTTTCTGGCGACTGCGGTCAGATGGAACGGGAGTTTCAAGCCGAAGTTGAGGCTCTCTCTCGAGCTCAACACAAGAACCTTGTTTCTCTTAAAGGCTATTGTCGGCACGGCAATGACAGGTTGCTAATTTACTCGTACATGGAAAATGGAAGCTTGGACTATTGGCTTCACGAGTGTGTGGATGAAACTTCAGCTCTCAAATGGGATATACGGCTCAAGATTGCACAAGGCGCGGCTCGAGGATTAGCTTACTTGCACAAAGGGTGTGAACCGTTTGTAGTGCACCGCGACGTTAAGTCGAGCAACATACTTTTGGATGATAAGTTCGAAGCTCATTTAGCCGATTTCGGCCTCTCAAGACTGCTTCAACCGTACGATACTCATGTCACAACAGATTTAGTAGGAACTTTAGGCTACATTCCTCCTGAATATAGTCAGACACTGACAGCAACGTTCCGCGGCGATGTCTATAGTTTCGGCGTCGTTCTTCTCGAGCTTCTTACCGGTAGAAGGCCTGTGGAAGTCATAAAGGGTAAAAATTGCAGGAATCTGGTGTCTTGGGTTTATCAAATGAAGTATGAAAACAATGAGCAGGAAATTTTTGATGAAGCCATTTGGGAAAAGGAAAGGGAGAAACAACTCTTGGAAGTGCTTTCCATTGCTTGTAAATGTCTTGACCAAGATCCAAGGCAAAGACCTTCTATTGAAATGGTTGTTTCATGGCTTGATAGTGTGAGATTTGATGGCTCTCAACAATGA 3186 0.4008 MVLPRCFWLRLFQFCVLSSLLCLSLSLDTRTQSCDPGDLSALKEFAGNLTNGSIVKLWSNDSVCCKWIGVVCGGDDNGESVTRVTKLILSEMSLNGTISPSLAKLEYLTVLNLSFNHLEGKLPQELSKLKKLKFLDLSYNMLLGPVAESLSGLSSIEVLNISSNSFSGNFLLFHSVEFTHLLALNVSNNSFTGKFSSQICNSSKAFHTLDLSLNHFDGDLEGLSNCTLSLKRLHLDSNSFSGHLPDSLYSMLALEQLSLSANNFSGKLSNELSKLTSLKSLVVSVNRFSGEIPNVFENLLQLEQLVAHANSFSGPLPSTLALCSKLIVLDLKNNSLSGSIDLNFTGLTSIRSLDLASNHLTGPLPSSLSFCRELKVLSLARNGLNGSIPESYAELSSLLFVSFSNNSLENLSGALSVLQKCKNLTTLILTKNFHGEEIPQSVPTAGFQSLMVLALGNCGLKNHIPSWLLKCRKLAVLDLSWNSLNGSIPSWIGEMDGLFYLDFSNNSLMGEIPKSLTEMKGLLCSNCGRPNLASNAFIPLFVKRNTSASGLQYNQASSFPPSILLSNNMLSGSIWPEIGNLKALHVLDFSRNNISGSIPSTISEMENLETLDLSYNDLSGTIPPTFNNLTFLSKFSVAHNHLQGPIPSGGQFLSFPSSSFEGNLGLCRDNDIDNATPCKIVNNMRPSLSSGSSRKFSRGNVLGITISIGVGLALLLAIVVVRMSKRPEDKTIGSFDEEMNSRPQRLLSAEALVSSKLVLFQNADCKDLTVSDLLKATNNFNQSNIVGCGGFGLVYKAYLPNGTKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYMENGSLDYWLHECVDETSALKWDIRLKIAQGAARGLAYLHKGCEPFVVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVYQMKYENNEQEIFDEAIWEKEREKQLLEVLSIACKCLDQDPRQRPSIEMVVSWLDSVRFDGSQQ* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5554 1061 Pfam Leucine rich repeat N-terminal domain 37 72 IPR013210 -
Psa5g5554 1061 Gene3D Transferase(Phosphotransferase) domain 1 856 1057 - -
Psa5g5554 1061 SMART serkin_6 780 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5554 1061 Pfam Leucine rich repeat 83 142 IPR001611 GO:0005515
Psa5g5554 1061 Pfam Leucine rich repeat 578 618 IPR001611 GO:0005515
Psa5g5554 1061 Gene3D Ribonuclease Inhibitor 375 676 IPR032675 -
Psa5g5554 1061 Gene3D Phosphorylase Kinase; domain 1 744 855 - -
Psa5g5554 1061 SUPERFAMILY RNI-like 232 645 - -
Psa5g5554 1061 SMART LRR_typ_2 395 418 IPR003591 -
Psa5g5554 1061 SMART LRR_typ_2 605 628 IPR003591 -
Psa5g5554 1061 SMART LRR_typ_2 105 129 IPR003591 -
Psa5g5554 1061 SMART LRR_typ_2 275 298 IPR003591 -
Psa5g5554 1061 SMART LRR_typ_2 347 371 IPR003591 -
Psa5g5554 1061 SMART LRR_typ_2 581 604 IPR003591 -
Psa5g5554 1061 Gene3D Ribonuclease Inhibitor 33 303 IPR032675 -
Psa5g5554 1061 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 165 - -
Psa5g5554 1061 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 284 444 - -
Psa5g5554 1061 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 563 620 - -
Psa5g5554 1061 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 463 520 - -
Psa5g5554 1061 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 618 1054 - -
Psa5g5554 1061 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 178 284 - -
Psa5g5554 1061 Gene3D Ribonuclease Inhibitor 304 374 IPR032675 -
Psa5g5554 1061 CDD STKc_IRAK 786 1052 - -
Psa5g5554 1061 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672|GO:0006468
Psa5g5554 1061 ProSitePatterns Protein kinases ATP-binding region signature. 786 808 IPR017441 GO:0005524
Psa5g5554 1061 PANTHER PHYTOSULFOKINE RECEPTOR 2 563 620 - -
Psa5g5554 1061 PANTHER PHYTOSULFOKINE RECEPTOR 2 618 1054 - -
Psa5g5554 1061 PANTHER PHYTOSULFOKINE RECEPTOR 2 284 444 - -
Psa5g5554 1061 PANTHER PHYTOSULFOKINE RECEPTOR 2 463 520 - -
Psa5g5554 1061 PANTHER PHYTOSULFOKINE RECEPTOR 2 32 165 - -
Psa5g5554 1061 PANTHER PHYTOSULFOKINE RECEPTOR 2 178 284 - -
Psa5g5554 1061 SUPERFAMILY Protein kinase-like (PK-like) 764 1051 IPR011009 -
Psa5g5554 1061 ProSiteProfiles Protein kinase domain profile. 780 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5554 1061 Pfam Protein kinase domain 781 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5554 1061 SUPERFAMILY L domain-like 37 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5554 Psa-Chr5 484083392 484087855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5554 156 647 Receptor kinase-like Gene Family AT1G55610 29.109 2.36e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Psa5g5554 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5554 - - mtr:MTR_2g078810 1765.36