Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5553 ATGGAGGATCTAGCAGGTCTTGTTGAGGCTACAGGATCAAGATTCACTTCATTGGAGCTTATTGGGCAGGGATCATTTGGTGATGTATATAAAGGGTTTGACAGGGAGCTCAACAAAGAAGTTGCCATCAAAGTGATTGATTTGGAAGAATCAGAGGATGACATTGACGATATTCAGAAGGAAGTTTCTGTTTTGTCACAATGTCGATGTCCATATATTACAGAGTATTATGGTTCTTTTCTCAACCAAACTAAACTATGGATAATAATGGAGTATATGGCTGGCGGCTCTGTTGCTGATCTACTCCAATCAGGTCCTCCCTTAGATGAAATGTCAATTGCTTACATTCTTCGTGACTTGTTGCATGCTGTTGATTACCTACATAGTGAAGGAAAAATCCATAGAGACATTAAAGCTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAGTTGACAAGGACTATATCAAGGAGAAAGACATTTGTAGGAACACCATTCTGGATGGCGCCCGAGGTTATTCAGAACACAGATGGATATAATGAGAAGGCAGATATCTGGTCTCTGGGAATCACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGGGTGCTTTTCATCATACCCCGAGAAAATCCTCCGCAGCTAGATGAGCATTTTTCTCGCCCCATGAAAGAATTTGTTTCATCATGTTTGAAGAAGGTTCCTGCTGAGAGGCTAAGTGCTAAGGAACTTCTCAAAGACCGCTTTATTCGGAATGCTAGGAAGAGTACAAAGCTTTTGGAAAGAATAAGTAGGGATCGTCCAAAATACCATCTTAAAGAAGACCTGGAGACAGCTAGAAATGGCTCAAGAGGGATTGGTGAGGGATCAGATACTATGAAAGTGGCAAGAGATTTTAGAGTTGAAGAAAATAATCGACCTAGCAGTCAGGTTAAAACCCTGAAAAGTTCTGAATGGGACTTTAGCATTGGTGAATCAGAGGGTACTGGAACCTTTCGAAGTGTTTCACGGCCACCTCAGTCTAGAGATAAGAAAACTGAAGTTTCATATAATCAGCTTACTCAAAAAAAAGCTCCAGACGCTGGCTATCAAGCGGGGTATGCCAATAGAAGTGCACCCAATCAATCACTTGAAAAAGATCTTAGAGCTCCTTACCATCACGAGCACCCAGATAATCAGCTTGAAGATGATGAATCATCTGGGAATGGATCTGGAACTGTTGTTATACGCTCTCCCAAAGGAATATCAAGGCCATCTGTGTTTCGTGACCATAGCTCCCAGGATGAATTGTCTGAGAATGGATCAGGAACTGTTGTTATTCGATCTCCGAAAGGATCAAAGCCATCTGGGTTTCGTGATCAGAGCTCCCAGTCCAGCAGCAGCTATGCTTCTTTTGAAGATACTTCTACTAGTGGAACCGTTGTTGTACGTAGCCAGCATGATGATTCTGATTCTCCACGTACTCCAAGGTCCCGACTAGGACTTCATGACAGAAGTTCAAATGCCTCACTTGAAGATAGTGCTGCAAACCTAGCCGAGGCAAGGGCTGCTATCCAAGGAGGGTTAAGAAAAGTGAATCCTCGGGAGAAACATTCCCGAGGGAAAATCAATACCGATGTACAGGAGAGCAAAAGAGACCAAATGACCAGCAGCACTGATTCTTCCAGATCATATCGGGAATACATTGATGCACAAAGGGGCAATGTAAGATCGCATCATGCCAGTGACGATGAAGAGAGTGCTAGAACAATATCATCGTCAGCACCATTATCAAGTTTGCTTATTCCTTCATTAAAAGAGGCCGTTGCTGATGATCCAGAAGGGAAAATCGGGCGGGCAGTTATCAATTCTTTAGTAAACATGGAAGGCACAAAGCCTAGATCCTCTGATGTTCTTGTAAAACAATTGCTTCAGAGATTAGCAAGTTCGAAGGAAGATTCACTGAAGGACCTGAAAGAACTGGCAAGCCAACTATTCAGCAAAGGCAAGTCAACGGAAGAAACGCTAAGTGCAGAGGCTGATAACCGAAGGAAACAGCATAACAAGGAACCTCATCCAAATAGCAACTTAAGCCCTCTTGCAAGATTTCTTCTATCAAGATGGCAAGGCCAAACCTCACGGGATCTAAACCAATCTTGA 2190 0.4292 MEDLAGLVEATGSRFTSLELIGQGSFGDVYKGFDRELNKEVAIKVIDLEESEDDIDDIQKEVSVLSQCRCPYITEYYGSFLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIAYILRDLLHAVDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNTDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSSCLKKVPAERLSAKELLKDRFIRNARKSTKLLERISRDRPKYHLKEDLETARNGSRGIGEGSDTMKVARDFRVEENNRPSSQVKTLKSSEWDFSIGESEGTGTFRSVSRPPQSRDKKTEVSYNQLTQKKAPDAGYQAGYANRSAPNQSLEKDLRAPYHHEHPDNQLEDDESSGNGSGTVVIRSPKGISRPSVFRDHSSQDELSENGSGTVVIRSPKGSKPSGFRDQSSQSSSSYASFEDTSTSGTVVVRSQHDDSDSPRTPRSRLGLHDRSSNASLEDSAANLAEARAAIQGGLRKVNPREKHSRGKINTDVQESKRDQMTSSTDSSRSYREYIDAQRGNVRSHHASDDEESARTISSSAPLSSLLIPSLKEAVADDPEGKIGRAVINSLVNMEGTKPRSSDVLVKQLLQRLASSKEDSLKDLKELASQLFSKGKSTEETLSAEADNRRKQHNKEPHPNSNLSPLARFLLSRWQGQTSRDLNQS* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5553 729 MobiDBLite consensus disorder prediction 345 390 - -
Psa5g5553 729 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Psa5g5553 729 MobiDBLite consensus disorder prediction 560 575 - -
Psa5g5553 729 MobiDBLite consensus disorder prediction 536 604 - -
Psa5g5553 729 CDD STKc_MST3_like 13 282 - -
Psa5g5553 729 MobiDBLite consensus disorder prediction 497 511 - -
Psa5g5553 729 Gene3D Transferase(Phosphotransferase) domain 1 12 300 - -
Psa5g5553 729 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5553 729 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 445 727 - -
Psa5g5553 729 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 444 - -
Psa5g5553 729 MobiDBLite consensus disorder prediction 541 559 - -
Psa5g5553 729 Coils Coil 48 68 - -
Psa5g5553 729 MobiDBLite consensus disorder prediction 576 597 - -
Psa5g5553 729 MobiDBLite consensus disorder prediction 447 496 - -
Psa5g5553 729 SUPERFAMILY Protein kinase-like (PK-like) 13 268 IPR011009 -
Psa5g5553 729 MobiDBLite consensus disorder prediction 684 701 - -
Psa5g5553 729 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5553 729 MobiDBLite consensus disorder prediction 676 711 - -
Psa5g5553 729 Coils Coil 651 671 - -
Psa5g5553 729 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5553 729 MobiDBLite consensus disorder prediction 408 523 - -
Psa5g5553 729 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 445 727 - -
Psa5g5553 729 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5553 Psa-Chr5 483675301 483690029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5553 1 726 MAP Kinase Kinase Kinase Kinase AT3G15220 59.945 0.0 804
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Psa5g5553 Pkinase 2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5553 K08838 - gmx:100815042 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5553 5 483675301 483690029 Psa5g5553 5 483675301 483690029 ECH