Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5549 ATGGATGATGAAAATGGCTCACGCAAAAGGATCAGAGGAAATCACCAACCTTCTAATCCTTTGGGAAGTTCTTCTGATTCTCCCCCTAACGAAGAACACACTGATGAGATCACTGAGATGGACACATCAAGCTTCCCAACGCAACCTCAAGGCAACAACAATGGCGTTCAGGTTCCTCTTCTCGCTCGTCGACAACTCCGTAGATTTGATATCCATTGTGTTTCATCAAATCCTCCACACAGTGCTATGATCACTCCACAAACAAGTTCTCAAATTCTGCATTCGGAAGGAGTCATGCCAGAGACATCTCTTAGCCATCAAATTGGGGTTGCTTTGACCGAAGAAAGGGAAAATTTAGAGGACCAAGATAGAATTACTCGCATGAATATCAATGGCATGACTTTTGAGGAGAATGCTTTGATGGATGAAATGGAAAATCTAATCAACCAACATCGACAATTTCTCTCACTTATTGATGAAATGTCTAATGAGGATTTTTCTTTATTTAATGAAGTGGGAAATCAAAATGATGAACATCAAGATATGCGGTTGAATATTGATGACATGTCTTATGAGGAACTTCTTCAATTGGGTGAGAGGATTGGAAGTGTATCCACTGGTTTATCAAAAGAAACAATTGCCATACAGCTGAAGACAAAACTTTTTTCACCAAGTCCTGTTGCTATTAATTTGGAGGAATTACCACCTGAAGAAGATGGGGAAAATAACTCTTGCCTAATATGCCAGTTTACTTGA 756 0.3955 MDDENGSRKRIRGNHQPSNPLGSSSDSPPNEEHTDEITEMDTSSFPTQPQGNNNGVQVPLLARRQLRRFDIHCVSSNPPHSAMITPQTSSQILHSEGVMPETSLSHQIGVALTEERENLEDQDRITRMNINGMTFEENALMDEMENLINQHRQFLSLIDEMSNEDFSLFNEVGNQNDEHQDMRLNIDDMSYEELLQLGERIGSVSTGLSKETIAIQLKTKLFSPSPVAINLEELPPEEDGENNSCLICQFT* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5549 251 MobiDBLite consensus disorder prediction 12 28 - -
Psa5g5549 251 Coils Coil 144 164 - -
Psa5g5549 251 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 69 166 - -
Psa5g5549 251 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 164 249 - -
Psa5g5549 251 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 48 - -
Psa5g5549 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 69 166 IPR045191 GO:0061630
Psa5g5549 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 164 249 IPR045191 GO:0061630
Psa5g5549 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 48 IPR045191 GO:0061630
Psa5g5549 251 MobiDBLite consensus disorder prediction 1 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5549 Psa-Chr5 483093596 483102224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5549 147 249 C3H Transcription Factor Family AT2G15530 41.071 1.12e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5549 K19041 - cam:101491086 124.79