Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5545 ATGAGATCATTACCATCCTCATCGGTTAGGGGCAACAGTGATTCGGGTTCGAGGGTTAGGAAGAAACATAAGAAGTTGGATGCAATATGTGAGGAAGAGTATAATCGAAACCATGGTGAGTTGAATGAGGGTGATAATTTGAATCCTGATTCAGGGGTTCGCAGAAGCTCCAGGGTTAGGCGTGTTCCGGTCATGCTTGATGCCTCTCCTTCGCCCAAGAAGAAACGTCAGAAGTCGGGGAAAGATGTAATGGCGAAGAGTTTGGAGGGTGATAAAAGTTCGGGGAGAGAAAGCGGGGGTTCTGTTGGTGTGAGATGGAGTTTGAGGTCGAGGTCAAGGGGTAAGAATGTGAGTTTTGAGGTGGAGGAGGAGAGAGAATTGCCCCGTAGGAAAAGAAAGCTGTTTGAGGTGGAGGAGGAGTTGGAGGTTGTCGAGGTTGATAAGGACGAGGAGTTAGAGGTTGTAGAGGTTGATAATAATGAGGAATTGGAGGTTGTGGAGGGTGATAGGAAGGAGGAATTGGAGGGTGATAAGAAAGTGGAGTTGAAAGGTTATACACGAAAAAGGTCTAGGTCGAAGAGAACAGGTAAATTTGATGTGACAAAGTATGTAAAAGGGCTTGAGGAAAATGAACGTCAAGAAGTGGAGCTTGTAGTTGTATTGAACCAAGGCAAGGGGAGTGCTTCGGTTCCGGAGACCGAATTGGCTGATGAAAATCCAATAGATTTTAGGGATGAGAATGCTGCTTCTGAGATGGGGAATGAGGAGAGAATTGAAACTGACAATTTGCAAGCAGAGGAATGTAGTGGTGATGTTGGACCGTCTCCTGTGGAACATGTAGAAACTGTTGATGAACAGGGAGATCAAGTAGAGAGCGAGAAGGAAGAAAAAGGTGCAAGTGATGTGGTTGAAATTGCTGGAGTTTCAACTAAACAGGTAGATAATGAAGGTTCTGTTGATAAGGAGGTTCACATTGAGGATAATATATCGAAAGATGAGAGTTTTGGGAGGAAGGATGAGTTGAAGCAACCATCAAAAGACAAGTCTGGGTACCGATGTATCAAAGAGGGCAGACGGTGTGGTTTGTGTGGAAGAGGGAGCGATGGTAAGCCTCCAAAAAGGTTAACTCAGGATAACGGTGAAAGTGAGAATGAAGCTTATAGCGGCTCATCAGCTTCAGAGCAGCCTACTTATGATACCTGGGATGGTTTTGACGATGGACCTGGCTGGCTTGGGCGTCTTTTGGGCCCTATTAATGATCGTTATGGTATTGCTGGAATATGGGTGCATCAGAATTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCTGGCTTGGGATGCTTAAAAAATGTGAGGGCTGCACTTTGTCGAGGAAGGGCATTGAAGTGCACACGTTGTGGGAGGCGAGGGGCAACCATTGGTTGTCGTGTTGACCGTTGTCCCAAAACTTATCATTTGGCTTGTGCAAGAGCAAATGGTTGCATCTTTGATCATCGGAAATTTCTTATAGCTTGCACAGATCATCTGCATCTTTTCCAACCTTGTGGTAATAAATATTTAGTCCGGATAAAGAAGTTGAGGGCTAGGAAAATGATGTGGGAGACGAGGAAGCGTTCAAATGATGCTTCGAGAAAGGATATTGATGCAGAAGAGAGATGGTTGGAAAATTGTGGGGAGGATGAAGAATTTTTGAAACGCGAGAACAAGAGGCTTCATCGTGATTTATTGAGAATAGCCCCAATGTATATTGGTGGTTCAGACTCTGCTGGTAGTGAAAATTCATTTCAGGGATGGGAATCTGTTGCTGGGCTTAAAGATGTCATCCATTGTATGAAAGAAGTTGTTATTATTCCTCTGCTATATCCTGATTTCTTCGATAATTTAGGGCTTACACCTCCAAGAGGTGTTCTTTTGCACGGGTATCCTGGAACAGGGAAAACCTTAGTGGTCCGGTCATTGATAGGTGCATGTGCTCGTGGAGATAGACGGATTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAATATGTGGGTGATGCTGAGCGTCAACTAAGACTGTTATTTCAGGTTGCTGAGAAATGTCAACCTTCTATAATATTCTTTGATGAGATTGATGGACTGGCACCCTGCCGAACTCCACAGCAAGACCAGACACATAGTTCTGTCGTATCAACATTGCTTGCTCTTATGGATGGTTTAAAATCTAGGGGATCAGTTGTGGTCATAGGTGCAACAAACCGTCCTGATGCTGTGGATCCAGCACTTAGGCGCCCTGGAAGATTTGATCGGGAAATTTACTTTCCGTTGCCATCAACTGAAGACAGAGCTTCCATTCTTTCACTTCACACACAGAAGTGGCCGAAACCAATTAGTGGATCCTTGCTTGGGTGGATTGCAAAGAAAACTTCTGGCTTTGCGGGTGCCGATCTTCAGGCTCTTTGTACCCAAGCGGCTATGAATGCGCTGAAGAGGAATTTCCCTTTGCAAAAGGTTCTATCTGTAGCTGAAAAAAGAAATTCTTCTGGTTGTAAGAACACTCCTCTTCCATCATTTACCGTGGAGGAGAGGGATTGGGTAGAGGCTTTTTCGTCTTCGCCATTACCGTGTTCCCAGAGAGAAGCTGGAAATGCTGCAAATGATGTAGTATGTTCCCCTCTTCCTGTCCAACTTATTCCTTGTTTATTGCGTCCATTATGCACTATTCTCGTATCTCTTTATCTCGATGAACGTCTGTGGTTGCCACTTCCTATATCCAAAGCCATGACATCGATTAAGAATGTAATAATTTCTGCTCTAGACAAAAAGAAAATCCCTGTTGATCATTGGTGGTTGCACCTTGATGATTTTCTTCAAGAAACAAATGTTGCTTACGAGGTAAGTAAGTGCCTTAGTTGTTCTGGCATTTTATCTTCAGACCATGGTTTTTCTGGTTCTTGTGATATTATGGATCATGCCGATGATAAACCCTCCAATAAAAACCATGTTAACCTGTGTAATGGTAGATTACCAGACATGCCATTTGGAATGACCAACAAATCAGGTTTTCGAATATTGATTTATGGAAATCCCCGATCTGGCCAGAGACATCTTGCTTCATGCCTTCTGTACTGCTTTATAGGAAATATTGAAGTACAGAAGATTGATATGGCAACTATTTCACAAGAAGGTCATGGAGATATTGTGCAAGGGATTGCACAAATATTAATGAAATGTGCTAGCACGAAATCTTGCGTAATATTCATGCCAAGAATTGATTTGTGGGCTGTGGAGGAGGATGTCAAAATTGCTGAAAAGACCGATTCCTGCTCAATGGATCAACTATCATCTGAGATGGACACAGCCTGTTTCACACCAAGAGAAATTGTTAAGGAAAATGGGATCAATACTGGAAAACACCCGGCAGAGATGATCAAATGTCAATCCGACAAAAAGGCTTCATATGCCTGGATGACATTTATTGAGCAGGTGGAGTCCATTGGTTTATCCACATCCTTGATGATTCTGGCTACTTCAGAAGTTCCCTATACTGAACTTCCACACAAGATAAGAGGATTCTTCAAGAGCTATCGATCAAAGGATAGACAATCAACTCCTATAGTGCAAACAGTTCCTCAATTCTCTCTCCAGATTGATGAGAATTTTGATCACGACTTGGCGATCAATCTATCTGCTATAGAGCTTTTAAGAAATGTAATTGAGCAGCGGATTCAATTGATTCATCAGAAATCTCATGCTCACATTGGTGTCCAGAAGCTTGACAGAGCCTTTGAATCAATTGAAGTTTGTAAAGAGAAGGTCACTCAGAGAAAAGAAAACGAACCAGGCCATGAGAAGAAGGGTGAAGTCCAATTTCCTGAATCCTTGGCCAAAGTTCCACAACCCAACAGCAGTAGATCACTAAAAGGAAAGTCAAATCTTTTAATGGCAATATCCACATTTGGCCATCAAATTCTCACATACCCTCATTTTGCTGAACTTTGTTGGGTCACTTCGAAACTCAAAGAAGGTCCTTGTTCTGATGTGAGCGGGCCATGGAAGGGCTGGCCTTTCAATTCGTGTATAATTCGTCCTACCAATTCACAAGACAAGGTGGTAATTTCCAGTAGCTCTGGTGGCACTAAAAGCAAAGAAAGTGCTGGTTTAGTTAGAGGCTTGGTTGCTGTTGGTTTATCAGCATACAGAGGTGTTTATAAATCAGTCAGGGAAGTTTCCCTTGAGGTAAGGAAAGTACTTGAGATCTTAACTGAGACAATTAACATGAAAATTCGAGCTGGGAGAAACAGATATCAATATCTGCGTATTTCATCCCAAGTCGCTTATTTGGAAGATATGGTCAACAACTGGGCTTATGCATTGTTGAGTCTAGACCAGGCTTCCCCAGAGCTTGCAGCAAAGGCCATACGAGAAGCTGCCGGGTCTTTAAACAGTCATCTAGCATGTGAAGACCCCCACATAGCCGAAGGTGAGGATTGTCATTTGGTTGTTCCTGCTGGCGGTGATGATTTGGAGACACTGGAGAAAAGTCCTAATGGAGTTTCCTTGAATGAAATAAATGATAATTTAGGTGATACTGATTGTGAAGGCCAAAGAGCACATTATGAAGGATCTCCACATAGCCATCATTGTCCAGATACGAATGTTACTAACTCTTGTCTTGTAAACCAATCTCTTCATCCATCCACGAATCAGGAGAATGGGGTGTTATCTGGAGTGTCTGAACTGATAACTGCTGAAAATCACGAAGCTGCAGGTGGAGAACTTGGAATGTCGAAAGACTTGAATAAATCAACATGCACTCGCCCTACAGTCGTTTCTGAAAATGGATTTCACACATGTGAACAGGAGAATATTGAGATTGGCAGCTCTAAATCAAGTAATGTTGAATCTGATAAACACGAGAATACTATAAATATCAACACCTGTTCAAGTAAGGACAGTGGTGCAGATGAATCTGGGGTTGTTTGCCTTTACCAATGTTGCCCTCATTGTCTCAGAAGCCTCTATCATTTGATGCGCAAGATACTTGTTCGCGCATGGGGATCAAACAGAAGCCATTGGACAATAGAGGATGTCCATGATGCTGTTTCTACATTATCCGTGGATCTTATTTCAGCAGTTAGAAAATCTTACATGGCAGAAGAAAAAGCTTTCACTGATTTATCCAATAACAAAACATCTGTTGAATATGCAAACCGAGGCAAAGATGTTGTGCCGGCTGAATGTGTTTCTCATGCAGCAAGTCAAGAGGCAAGTGTGAGTGAAGACGCAGCAACAAATGAACCGGTAAAGCTTGATTTGAAATTTGTTTTCAGAGATGGTGTGCTAGTTCCTATGGACCCTGCAAAAGATGCTCCTCTTCACTGTAAATTTGAGAAATTGAGTCTTTGTTCTCTGATAGAGTTGATAGTGAAAACTAAGGGCCCTTTAGATTAA 5439 0.4264 MRSLPSSSVRGNSDSGSRVRKKHKKLDAICEEEYNRNHGELNEGDNLNPDSGVRRSSRVRRVPVMLDASPSPKKKRQKSGKDVMAKSLEGDKSSGRESGGSVGVRWSLRSRSRGKNVSFEVEEERELPRRKRKLFEVEEELEVVEVDKDEELEVVEVDNNEELEVVEGDRKEELEGDKKVELKGYTRKRSRSKRTGKFDVTKYVKGLEENERQEVELVVVLNQGKGSASVPETELADENPIDFRDENAASEMGNEERIETDNLQAEECSGDVGPSPVEHVETVDEQGDQVESEKEEKGASDVVEIAGVSTKQVDNEGSVDKEVHIEDNISKDESFGRKDELKQPSKDKSGYRCIKEGRRCGLCGRGSDGKPPKRLTQDNGESENEAYSGSSASEQPTYDTWDGFDDGPGWLGRLLGPINDRYGIAGIWVHQNCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPKTYHLACARANGCIFDHRKFLIACTDHLHLFQPCGNKYLVRIKKLRARKMMWETRKRSNDASRKDIDAEERWLENCGEDEEFLKRENKRLHRDLLRIAPMYIGGSDSAGSENSFQGWESVAGLKDVIHCMKEVVIIPLLYPDFFDNLGLTPPRGVLLHGYPGTGKTLVVRSLIGACARGDRRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTPQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPDAVDPALRRPGRFDREIYFPLPSTEDRASILSLHTQKWPKPISGSLLGWIAKKTSGFAGADLQALCTQAAMNALKRNFPLQKVLSVAEKRNSSGCKNTPLPSFTVEERDWVEAFSSSPLPCSQREAGNAANDVVCSPLPVQLIPCLLRPLCTILVSLYLDERLWLPLPISKAMTSIKNVIISALDKKKIPVDHWWLHLDDFLQETNVAYEVSKCLSCSGILSSDHGFSGSCDIMDHADDKPSNKNHVNLCNGRLPDMPFGMTNKSGFRILIYGNPRSGQRHLASCLLYCFIGNIEVQKIDMATISQEGHGDIVQGIAQILMKCASTKSCVIFMPRIDLWAVEEDVKIAEKTDSCSMDQLSSEMDTACFTPREIVKENGINTGKHPAEMIKCQSDKKASYAWMTFIEQVESIGLSTSLMILATSEVPYTELPHKIRGFFKSYRSKDRQSTPIVQTVPQFSLQIDENFDHDLAINLSAIELLRNVIEQRIQLIHQKSHAHIGVQKLDRAFESIEVCKEKVTQRKENEPGHEKKGEVQFPESLAKVPQPNSSRSLKGKSNLLMAISTFGHQILTYPHFAELCWVTSKLKEGPCSDVSGPWKGWPFNSCIIRPTNSQDKVVISSSSGGTKSKESAGLVRGLVAVGLSAYRGVYKSVREVSLEVRKVLEILTETINMKIRAGRNRYQYLRISSQVAYLEDMVNNWAYALLSLDQASPELAAKAIREAAGSLNSHLACEDPHIAEGEDCHLVVPAGGDDLETLEKSPNGVSLNEINDNLGDTDCEGQRAHYEGSPHSHHCPDTNVTNSCLVNQSLHPSTNQENGVLSGVSELITAENHEAAGGELGMSKDLNKSTCTRPTVVSENGFHTCEQENIEIGSSKSSNVESDKHENTININTCSSKDSGADESGVVCLYQCCPHCLRSLYHLMRKILVRAWGSNRSHWTIEDVHDAVSTLSVDLISAVRKSYMAEEKAFTDLSNNKTSVEYANRGKDVVPAECVSHAASQEASVSEDAATNEPVKLDLKFVFRDGVLVPMDPAKDAPLHCKFEKLSLCSLIELIVKTKGPLD* 1813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5545 1812 MobiDBLite consensus disorder prediction 1269 1299 - -
Psa5g5545 1812 Gene3D - 772 833 - -
Psa5g5545 1812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 828 IPR027417 -
Psa5g5545 1812 Pfam PHD-like zinc-binding domain 430 508 - -
Psa5g5545 1812 MobiDBLite consensus disorder prediction 281 301 - -
Psa5g5545 1812 MobiDBLite consensus disorder prediction 315 349 - -
Psa5g5545 1812 CDD AAA 630 771 - -
Psa5g5545 1812 ProSitePatterns AAA-protein family signature. 741 759 IPR003960 GO:0005524|GO:0016887
Psa5g5545 1812 SMART AAA_5 632 773 IPR003593 -
Psa5g5545 1812 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 50 1808 - -
Psa5g5545 1812 MobiDBLite consensus disorder prediction 366 398 - -
Psa5g5545 1812 MobiDBLite consensus disorder prediction 1269 1286 - -
Psa5g5545 1812 MobiDBLite consensus disorder prediction 1 123 - -
Psa5g5545 1812 ProSiteProfiles Extended PHD (ePHD) domain profile. 397 509 IPR034732 -
Psa5g5545 1812 MobiDBLite consensus disorder prediction 267 349 - -
Psa5g5545 1812 Pfam AAA+ lid domain 797 829 IPR041569 -
Psa5g5545 1812 Pfam ATPase family associated with various cellular activities (AAA) 636 771 IPR003959 GO:0005524|GO:0016887
Psa5g5545 1812 MobiDBLite consensus disorder prediction 381 398 - -
Psa5g5545 1812 MobiDBLite consensus disorder prediction 20 40 - -
Psa5g5545 1812 MobiDBLite consensus disorder prediction 71 93 - -
Psa5g5545 1812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 355 510 IPR013083 -
Psa5g5545 1812 PANTHER AAA DOMAIN-CONTAINING 50 1808 IPR045199 -
Psa5g5545 1812 Gene3D - 597 771 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5545 Psa-Chr5 481549568 481558404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5545 598 833 Calmodulin-binding Proteins AT3G56690 40.756 1.35e-44 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5545 - - gmx:100803849 2337.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5545 5 481549568 481558404 Psa5g5545 5 481549568 481558404 ECH