Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5540 ATGGTTTGCATGGATTTGGCTAAAGTTGTGTCAAATTATCTGGTTTTCAAGTCAAAAAGTCTACATGCAAAGGAATTGCAGGTGCCTAGGTTGGACAACTCTGATAACGTGGCGGAAGTAGATTTAGCTATGGGATTGGAGCAAAGAGGTGTTGTGGGGCTCAGTTCATTGAACTTTGTTGAACCTAGACCAACAATTTCAGATCACGTGGCTTTACAGAATAAAGGCTTAGAGTGGATTAATCATGTTCCTGTCAATTATGCCTTTTCTGGCTCAATGCCTGGTCAGGATAATGTCTACTGGTCAATGAACATGAGTCCCTATAAGTTTGGAATGTCTGGCCTTGGAAGTACATCTTATTATAGTTCTTATGAGGTAAATGATCATTTTCCAAGAATGGAGAACAACATGGTCGAGTGGGAATACCCTTCTAAAGTGATCTCTGAAGCTCCTGCTTCATCATATTTTCCGCCTAGAAGAGATGAAGTTAGCATGCAGACTATTCCTGAAGAATGTTAG 519 0.4046 MVCMDLAKVVSNYLVFKSKSLHAKELQVPRLDNSDNVAEVDLAMGLEQRGVVGLSSLNFVEPRPTISDHVALQNKGLEWINHVPVNYAFSGSMPGQDNVYWSMNMSPYKFGMSGLGSTSYYSSYEVNDHFPRMENNMVEWEYPSKVISEAPASSYFPPRRDEVSMQTIPEEC* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5540 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 78 172 - -
Psa5g5540 172 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 78 172 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5540 Psa-Chr5 481413822 481416077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5540 84 142 C3H Transcription Factor Family AT3G63530 47.458 6.03e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5540 K19045 - gmx:100792734 132.88