Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5539 ATGAACCCTAACTGGGTTCAACTCAAACAGAAGCTGAATCTTAATGGCTCCAAACCTTCAAGGACTTATGATTCTGAAGATGACACCCCAAATTCAATATTGGGGAAACGTAAAGAGAGGCTAAATGATGATTCTGATGATTGTGAGATTAACCCTCTTGATCCTGTAAATGATGATGCAAGTTTGACAGATGCTGTGGGCATGGATTGTGAAATGGTTGGGGTTGGTCAAGGAAACAAAAGTGCCCTTGCAAGAGTATCATTGGTAAACAAGTGGGGCAATGTTATTTACGACGAGTTTGTACGGCCAATGGAGCGGATTGTTGACTACCGTACTAAAATTAGTGGCATAAGACCTCAAGATCTGAGAAAAGCAAAGGATTTTTGTACTGCTCAGAAGAAGGTGGCAGAGTTGATCCACGGAAGGATCCTTGTAGGCCATGCCTTGTCCAACGATCTTAAGGCATTGTTATTAAGTCATCCCAAAAAGGATATAAGAGATACCTCCGAGTACCCACCGTTTCTAAGGTCAAGTGGTAGAGTAGCATTGAGGCATCTTGCTTCAGAACATCTCGGTGCTAAGATTCAATCAGGAGAGCATTGCCCGGTGGATGATGCCCGCGCTGCTATGATGCTTTACCAAAGGAATAGAAAAGAATGGGAGAAGAGCGTAAAAGGCAACTTTCGGAAGCAAAAGAAAAGGAAGAAGAATAAAGATGCAAAAGAATGA 729 0.4252 MNPNWVQLKQKLNLNGSKPSRTYDSEDDTPNSILGKRKERLNDDSDDCEINPLDPVNDDASLTDAVGMDCEMVGVGQGNKSALARVSLVNKWGNVIYDEFVRPMERIVDYRTKISGIRPQDLRKAKDFCTAQKKVAELIHGRILVGHALSNDLKALLLSHPKKDIRDTSEYPPFLRSSGRVALRHLASEHLGAKIQSGEHCPVDDARAAMMLYQRNRKEWEKSVKGNFRKQKKRKKNKDAKE* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5539 242 Pfam Exonuclease 66 213 IPR013520 -
Psa5g5539 242 MobiDBLite consensus disorder prediction 227 242 - -
Psa5g5539 242 PANTHER RNA EXONUCLEASE 4 35 239 - -
Psa5g5539 242 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 35 239 - -
Psa5g5539 242 SMART exoiiiendus 64 222 IPR013520 -
Psa5g5539 242 MobiDBLite consensus disorder prediction 222 242 - -
Psa5g5539 242 MobiDBLite consensus disorder prediction 21 46 - -
Psa5g5539 242 Coils Coil 203 223 - -
Psa5g5539 242 SUPERFAMILY Ribonuclease H-like 66 219 IPR012337 -
Psa5g5539 242 MobiDBLite consensus disorder prediction 16 46 - -
Psa5g5539 242 CDD REX4_like 66 214 IPR037431 GO:0006364|GO:0008408
Psa5g5539 242 Gene3D - 60 240 IPR036397 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5539 65 219 C2H2 Transcription Factor Family AT5G40310 36.842 5.21e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5539 K18327 - gmx:100819122 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5539 5 481402117 481405156 Psa5g5539 5 481402117 481405156 ECH