Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5534 ATGGATCAGATGACGGATTCGGATATGGATCAACAACGGCAAGGCTATTTTCATTCTGAACATTGTGTTCTTATGAGAGGTCCCAGTGTCGGACATCCTAATATCCGATCAGTGGTGACTGCTTCAGGGAACACATCTAATGGCGATTCTCACTATTTACCGGATGCTTATGACAATGCTAGGGTGTATGGGATTACACAATACAACGGCATTCAGCCTCAACATAATCTTGATATGGGCGTTGCAACTGCAGGCAACATATACTATTCTGGCATGAATCCTTCTTCGAGTACCGGTGTTTACCCTCTGCCTCATCGAGCCTCTGATCAGATGCCAGGTTCAAGTACATTCGCAATCTCTGGAGTTTCCTTGGATAATTTCGGTAGAAGCAATGGTTTTGTGGATGACGGAAGAGGTCCATACAAAAGGAAAGTTGCTGAAGGGATAAGAGGAAACCACCAACATTTTAATGCTTCAACTAGTTCTTCTATTGCTCCACCAAATGCAAGACACCCTGACGGGGTTGCTATGATGGATAATGCGCCATTGCCATTCCGCGTCCCTTCGCTCATTGGAGTAGGGCCGCACGGCGGTGCTTGGAGCAGGTCAGGTGAGTCTATTATGATGCATGACCATAACCATTTGATACACGGAAACTATTTGGGGCAGCACTTTCCACCAGCGGCTCCTCCTTGGTTGGACCAGCAAGTGAATAGTAATAGCAATGATGGCCATACTACAGCCTGGAATCCACCTGTTCCAATGCCTTATATACAAGCACCCAATATTAATGGAGGTTCATTAGAGAGTGCAAGTATGGGCTTGCAGAGGTATCACGACACAGCCGGTAACCGAAATGTCCTGAGGTTTCCTCCTCCGCCTCCTCCTGTCAACCAACAGCACCCTAATTATCATCATCCAACACTTCCAATGCAAGGAATAAGAGGTCACAATATCAACTTTCATCCTCCGGTGACTGCAGCTTCATTTAGGGTTCCACCAAATCCTCCTCGCGGTTCTGTGATCCCTCCACCGACTGGTTTTGAGGCAGGTCCTAGGCATATTATCCCTGCACCATCAACAGGCTTCCGGATATACCGACCTCATAGGCTCATGCCAGAGACAGCTCTCGGACATCGAAGCCTACCTCCCGTGGGCTTCCTCCAAGTTGATGATGTTGCCTTAATTGATGAAGTGGGAAATCTGATTGACCATCACCGAGATATGCGCCTGGACATAGAGGACATGTCTTATGAGGATCTTCTTGCATTGGGCGAGAGGATTGGCAGTGTAAACACTGGCTTATCAGAGGAAACAATTGCGAATGAACTAAAGACGAAAGTTTATTCAACAAAAGCCACTGCTATTAATCTGGAGGAGGCAGCTTCTGACGATCAGGAATCTGATTCTTGCATCATATGTCAGGAGGAGTTTAAGAACAAGGAGAAGATCGGCATTCTTCGATGCGAGCATGAGTATCACGTGGATTGCCTGACAAAGTGGTTGCTTGTCAAGAACGTCTGTCCTATATGCAAATCAGAAGCCTTGGCTACTGGAAGGAAGGATGCATAG 1572 0.4682 MDQMTDSDMDQQRQGYFHSEHCVLMRGPSVGHPNIRSVVTASGNTSNGDSHYLPDAYDNARVYGITQYNGIQPQHNLDMGVATAGNIYYSGMNPSSSTGVYPLPHRASDQMPGSSTFAISGVSLDNFGRSNGFVDDGRGPYKRKVAEGIRGNHQHFNASTSSSIAPPNARHPDGVAMMDNAPLPFRVPSLIGVGPHGGAWSRSGESIMMHDHNHLIHGNYLGQHFPPAAPPWLDQQVNSNSNDGHTTAWNPPVPMPYIQAPNINGGSLESASMGLQRYHDTAGNRNVLRFPPPPPPVNQQHPNYHHPTLPMQGIRGHNINFHPPVTAASFRVPPNPPRGSVIPPPTGFEAGPRHIIPAPSTGFRIYRPHRLMPETALGHRSLPPVGFLQVDDVALIDEVGNLIDHHRDMRLDIEDMSYEDLLALGERIGSVNTGLSEETIANELKTKVYSTKATAINLEEAASDDQESDSCIICQEEFKNKEKIGILRCEHEYHVDCLTKWLLVKNVCPICKSEALATGRKDA* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5534 523 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 126 519 - -
Psa5g5534 523 Pfam Ring finger domain 469 512 IPR001841 -
Psa5g5534 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 126 519 IPR045191 GO:0061630
Psa5g5534 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 516 IPR013083 -
Psa5g5534 523 SUPERFAMILY RING/U-box 465 515 - -
Psa5g5534 523 SMART ring_2 471 511 IPR001841 -
Psa5g5534 523 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5534 Psa-Chr5 481014699 481018652 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5534 388 518 C3H Transcription Factor Family AT2G15530 45.985 4.12e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5534 K19041 - gmx:100800642 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5534 5 481014699 481018652 Psa5g5534 5 481014699 481018652 ECH