Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5529 ATGGCGAAAACGAGGCCAGGAAAAAAAGACATGGACTCATACACCATAAGAGGAACTAACAAGGTTGTTAAAGCTGGAGATTGTGTTTTGATGCGTCCTTCGGACACGAGTAAGCCACCATACGTGGCACGTGTGGAGAAGATCGAGCAAGATAATAGGGGCAATGTGCGGGTTCGTGTGAGATGGTATTACAGACCTGAAGAATCTCTTGGTGGAAGAAGACAGTTTCATGGAGCAAAGGAACTGTTTTTATCTGATCATTTTGATGTTCAAAGTGCTCACACTATTGAAGGAAAGTGTATTGTTCACTCTTTCAAGAACTATACTAAGCTTGAGAATGTAGGTTCTGAAGATTATTATTGTAGGTTTGAGTATAAGGCTGCTACTGGTGCTTTCACCCCTGACCGCGTCGCTGTATACTGCAAATGTGAGATGCCTTATAATCCGGATGACCTAATGGTGCAGTGCGAGGGGTGCAAAGATTGGTACCATCCGGCTTGTGTGGGCATGACTATTGATGAAGCGAAGAAGTTGGATCATTTTGTTTGTTCTGAATGTTCATCTGATGATGATATGAGGAAACCACCGACGCCATTTCCTGCATCACCGGGATCTGATGGCAAGGTGGAGCCAAAGCGGCGAAAGAGAGGACCGTGA 657 0.449 MAKTRPGKKDMDSYTIRGTNKVVKAGDCVLMRPSDTSKPPYVARVEKIEQDNRGNVRVRVRWYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGSEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIDEAKKLDHFVCSECSSDDDMRKPPTPFPASPGSDGKVEPKRRKRGP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5529 218 Gene3D - 2 132 IPR043151 -
Psa5g5529 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 197 IPR013083 -
Psa5g5529 218 PANTHER BNAC03G64850D PROTEIN 3 213 IPR045205 GO:0006325|GO:0035064
Psa5g5529 218 PANTHER OS08G0421900 PROTEIN 3 213 - -
Psa5g5529 218 SMART PHD_3 140 187 IPR001965 -
Psa5g5529 218 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Psa5g5529 218 Pfam BAH domain 23 135 IPR001025 GO:0003682
Psa5g5529 218 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Psa5g5529 218 CDD BAH_BAHCC1 22 156 - -
Psa5g5529 218 SMART BAH_4 21 136 IPR001025 GO:0003682
Psa5g5529 218 MobiDBLite consensus disorder prediction 187 218 - -
Psa5g5529 218 Pfam PHD-finger 140 188 IPR019787 -
Psa5g5529 218 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Psa5g5529 218 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5529 Psa-Chr5 479163769 479166536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5529 31 132 Core DNA Replication Machinery Family AT4G14700 30.097 7.38e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa5g5529 BAH 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5529 K25868 - gmx:100800993 441.039