Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5514 ATGAATGGCGGTGAGATAGTGGAAGTTGACGGCGGTCACATTATACGGTCAAGAGGAAGAAAAGACCGTCACAGTAAAGTTTGCACCGCGAAAGGCCCGAGAGACCGGCGGGTCCGTTTATCGGCCCACACCGCTATTGAATTCTACGATGTTCAAGATCGGTTGGGCTTTGACCGGCCCAATCGGTTGGGCTTTGACCGGCCCAGTAAAGCCCTTGACTGGCTCATTAATAAAGCCAAGCCCGCCATCGATCGACTCGCGCAACTTCCTCCATGGAAACCCACTCTTGTTTCTAAACAAGAACAAAACGACGACGTAGCGGAGAAAGAAAACGCTAACGAAAACGAGTTTCGTTTTCTTCAGAACTTCAACAACAACAACAACGACAATAACAGTACCAACAGTTTCATTCCGTTTGAAACGGAAACGACGTCGTCTTCGCCGATTCAGTTTCAGACTTATAATAGTACCACTCCTGATTTGCTTTCCAGAACGAATAGTAATGATTTGCGTCTCTCGCTTCAACAGAATCGGAATCAGCAGGCGCTATTCGCCGGGAACTTTGATGGAATTCCGGTAGCATGGAATTCCGGTGGTGGTGGTGGTGGTGGTGGTGGTGCTACTACTATTGATACTGGTAGTGGTGGTAGTAATCAGAATCATAATGATGATGCTTCGGGTGGAGGTTTTGTGTTTCGTACTCCTTCACCTTCGCCGGTGGGTTTTCCGGCGGTGATGTATGGTCAGAATCAGTATCTTTCTCAGAGGGGACCCCTTCAGTCCAGTTACAGTCCTTCCGTTCGTGCTTGGATAGATGCGCCGACGTTTGTTGCTGCTGATTATCGACGGCAGACGGGTGCGTTGGGTGCCGGATTTGCATCTGGTAGCTTTTCTGGTTTCCGTGTGCCGGCACGAATTGGAGGTGATGAGGAGGAGTTGCATGGCGGCGTATCTGTATCTGACAGGCCGTCGTCTGCTTCCTCTGATTCTCGCCGTTGA 999 0.4995 MNGGEIVEVDGGHIIRSRGRKDRHSKVCTAKGPRDRRVRLSAHTAIEFYDVQDRLGFDRPNRLGFDRPSKALDWLINKAKPAIDRLAQLPPWKPTLVSKQEQNDDVAEKENANENEFRFLQNFNNNNNDNNSTNSFIPFETETTSSSPIQFQTYNSTTPDLLSRTNSNDLRLSLQQNRNQQALFAGNFDGIPVAWNSGGGGGGGGGATTIDTGSGGSNQNHNDDASGGGFVFRTPSPSPVGFPAVMYGQNQYLSQRGPLQSSYSPSVRAWIDAPTFVAADYRRQTGALGAGFASGSFSGFRVPARIGGDEEELHGGVSVSDRPSSASSDSRR* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5514 332 Pfam TCP family transcription factor 19 131 IPR017887 -
Psa5g5514 332 MobiDBLite consensus disorder prediction 1 27 - -
Psa5g5514 332 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 61 IPR005333 GO:0003700
Psa5g5514 332 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 62 126 IPR005333 GO:0003700
Psa5g5514 332 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 193 331 IPR005333 GO:0003700
Psa5g5514 332 ProSiteProfiles TCP domain profile. 20 86 IPR017887 -
Psa5g5514 332 PANTHER TRANSCRIPTION FACTOR TCP4 62 126 - -
Psa5g5514 332 PANTHER TRANSCRIPTION FACTOR TCP4 2 61 - -
Psa5g5514 332 PANTHER TRANSCRIPTION FACTOR TCP4 193 331 - -
Psa5g5514 332 MobiDBLite consensus disorder prediction 308 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5514 Psa-Chr5 477780415 477781472 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5514 4 332 TCP Transcription Factor Family AT3G15030 40.842 6.77e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Psa5g5514 TCP 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5514 - - cam:101504111 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5514 5 477780415 477781472 Psa5g5514 5 477780415 477781472 ECH