Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5494 ATGTCACGTTCGCCGGGAAAATCCAAACCCGATGCTATCGGGTCGGGCAAAATTACCGATCGGTTTCGTGAAGCGGTGACTTTGGAAGCGAATAAACCGGATTTTCGTGAACTCGATCATGGTTCACCTGTTTCGCCATTGAGGACGACGCGTGGAGGACCGGCGGTTAGTAGTAGTTCGGGTTCTTCTGGATCTTTCTCTGGTAAAACCGGGTCTAAACCGGTTTCCAAGAAGTCCACTTCGGCGCCGATTCATAGCAGTAACTCCGGCGAGCTTTCTGGTTCTAGTGATAACAGTCCAACCGCGAGTAGATCCGGAGGGAATGTGAGAGGTTCGAAACCGAAACCGGGGGATTCAAGATCCAATTCAGGATCCGGAGCGACTCCGAAGAAACATTCTGGTCAAACTGTGAACTCTCCGCCGTTGAATGTTCTTCCGGCGGGGAATATTTGTCCTTCTGGAAAGATCGTGAAGACCGGCATGGCGTATAAGAATACAAAGAGTGATGTTCTTGGTTATGGAACTGGGAACTATGGTCACGGTAGCATAATGCGCGGCACCACTGCGGGTGGCGCCGGGAGAGTAGATACTAGTAGCATGAGGGGCGGCATTGGGAGTGATTCGGGGAAAAGAGGGGTGGAAAGTGTGGATCCAGAACAGCTCAATTTAGTAGGGAATGAGCATTACAAGAGGGGTGAATTTGCGGAGGCATTGAGTTTTTATGACCGTGCAGTAGCTGTTTTGCCGAGGAGTGCTTCTCACCGGAGCAACCGTGCCGCCGCGTTGATCAGTTTGGGAAGACTGCCTGAAGCTGTGAGGGAATGCCAGCTGGCACTTAATTGCGATCCTGATTATCATAGGGCTCATCATCGTTTGGCTTCTCTATTCATCAGGTTAGGACAAGTTGAGAATGCTAGGAGACACCTTTGTCATCCTGGATTGACTCCGAATCCGACCGAGATGCTCAAGTTGCAACTTGTGGATAAGCATATTAATAAGTGTACAGGTGTTAGGAGGGTAGGGGATTGGAAAAGTGTTCTGAGGGAACTTGATGGTGCTTCTACTGCTGGAGCTGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTTTGAATCTTCGTCAAATTGATGATGCAGAATCAGTTATGGCACATGCTCCGAAATCGGATCCACAAATTAATAGTACACCTTTTGAAGCAATATTTTTTGGGATGTTTGCTGAAGCTTATTCCTACTATGTCAGATCTAAGATTGAGATGGCATTGGGAAGGTTTGAGAATGCGGTTACATCTGTTGAGAAGGCAAATAAAATCGATCCCCAAAATATTGAACTTGCTGTTTGGCTTAACAATGTAAGGAAAGTGGCTAGAGCTCGAACTCGTGGCAATGATCTTTTCAAATCTGACCGGTTCACTGAAGCTTGCTCAGCATATGGAGATGGTTTGAAATTAGACCCTTCAAATTCTGTTCTGTATTGCAATAGAGCAGCATGTTGGTATAAGCTTGGTCAATGGCAAAAATCAATTGAAGACTCTAACCAAGCTTTACATTACCAACCAAATTACATGAAAGCTCTTCTTCGAAGGGCTACATCATATAACAAGCTAGAAAAGTGGGAAGAAGCGGTTAAAGATTACGAGGTCTTGCGAAAAGAACTTCCAAATGACAATGATGTTGCTGAAGCTCTTTTTCATGCACATATTTCACTAAAAAAATCTCGTGGAGAAGAAGTTACTAATTTGAAGTTTGGTGGTGAAGTGGAACGAGTATCAGGTCTTGAGCAGTTTAGAACTGCAATATCTTCATCAGGTGTTTCTGTTGTCCATTTTGAAGCTGCATCAAACTCGAAATGCAGGCAATTATCGCCATTTTTGGATACATTATGTGGCAAATATCCATCTGTTAACTTCCTCAAGGTGGACATTCATGAAAACGCGATAGTTGCAACTGATGAGAATGTTAGAGTTGTACCAACCTTCAAGATATACAAAAATGGAAACCAAGTGAAGGTTATCGTATGCCCTAGTCGCGACGTGTTGGAGCAGTCTGTCAAGCATTACAGCCTTTAG 2076 0.4489 MSRSPGKSKPDAIGSGKITDRFREAVTLEANKPDFRELDHGSPVSPLRTTRGGPAVSSSSGSSGSFSGKTGSKPVSKKSTSAPIHSSNSGELSGSSDNSPTASRSGGNVRGSKPKPGDSRSNSGSGATPKKHSGQTVNSPPLNVLPAGNICPSGKIVKTGMAYKNTKSDVLGYGTGNYGHGSIMRGTTAGGAGRVDTSSMRGGIGSDSGKRGVESVDPEQLNLVGNEHYKRGEFAEALSFYDRAVAVLPRSASHRSNRAAALISLGRLPEAVRECQLALNCDPDYHRAHHRLASLFIRLGQVENARRHLCHPGLTPNPTEMLKLQLVDKHINKCTGVRRVGDWKSVLRELDGASTAGADSSPQLFMCRAEALLNLRQIDDAESVMAHAPKSDPQINSTPFEAIFFGMFAEAYSYYVRSKIEMALGRFENAVTSVEKANKIDPQNIELAVWLNNVRKVARARTRGNDLFKSDRFTEACSAYGDGLKLDPSNSVLYCNRAACWYKLGQWQKSIEDSNQALHYQPNYMKALLRRATSYNKLEKWEEAVKDYEVLRKELPNDNDVAEALFHAHISLKKSRGEEVTNLKFGGEVERVSGLEQFRTAISSSGVSVVHFEAASNSKCRQLSPFLDTLCGKYPSVNFLKVDIHENAIVATDENVRVVPTFKIYKNGNQVKVIVCPSRDVLEQSVKHYSL* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5494 691 SUPERFAMILY Thioredoxin-like 494 689 IPR036249 -
Psa5g5494 691 Pfam Tetratricopeptide repeat 229 289 - -
Psa5g5494 691 Pfam Tetratricopeptide repeat 480 511 - -
Psa5g5494 691 MobiDBLite consensus disorder prediction 51 108 - -
Psa5g5494 691 MobiDBLite consensus disorder prediction 14 41 - -
Psa5g5494 691 SUPERFAMILY TPR-like 218 447 IPR011990 GO:0005515
Psa5g5494 691 SMART tpr_5 252 285 IPR019734 GO:0005515
Psa5g5494 691 SMART tpr_5 457 490 IPR019734 GO:0005515
Psa5g5494 691 SMART tpr_5 525 558 IPR019734 GO:0005515
Psa5g5494 691 SMART tpr_5 218 251 IPR019734 GO:0005515
Psa5g5494 691 SMART tpr_5 491 524 IPR019734 GO:0005515
Psa5g5494 691 SMART tpr_5 411 444 IPR019734 GO:0005515
Psa5g5494 691 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 689 IPR044534 -
Psa5g5494 691 ProSiteProfiles TPR repeat profile. 411 444 IPR019734 GO:0005515
Psa5g5494 691 MobiDBLite consensus disorder prediction 115 143 - -
Psa5g5494 691 Gene3D Glutaredoxin 584 690 - -
Psa5g5494 691 Pfam Thioredoxin 596 686 IPR013766 -
Psa5g5494 691 CDD TRX_family 596 687 - -
Psa5g5494 691 Pfam Tetratricopeptide repeat 412 444 IPR019734 GO:0005515
Psa5g5494 691 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 21 689 - -
Psa5g5494 691 Pfam Tetratricopeptide repeat 527 557 IPR019734 GO:0005515
Psa5g5494 691 MobiDBLite consensus disorder prediction 1 145 - -
Psa5g5494 691 Gene3D Tetratricopeptide repeat domain 216 577 IPR011990 GO:0005515
Psa5g5494 691 ProSiteProfiles TPR repeat profile. 218 251 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5494 Psa-Chr5 476027448 476032313 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5494 459 601 U-box Gene Family AT3G07370 28.889 3.90e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5494 - - gmx:100795358 900.968