Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5492 ATGGCACTGGCTTCTACATTCGTTTCCTTAGCAATATTATTACTATTGTACTGCCTCAATTTCTTTTCCGTGAATGCAAATTCCTACAGAGAATTCCTTCAAATGGGACAGTCAGTCAGAATTTCTGACACAGTTGTTTCATACGGTGGAAACTATGAACTTGGATTTTTCACCAGAGACAGAGACAACTCCACCAAGTACTACGTAGGTATATGGTTCAAAAAGGTACCAAAGGACAAGATTGTTTGGGTTGCCAACAGAGATTACGCATTCCAAACATCCTCGGCGTTTCTTACCATTCAACCTGATGGTAACATTGCAATCAGAGATGGACAAATGACGTACCTGGTGACCAACGTTCCAAACAACAGTTATAGTAACTATGCAACACTGTTGGACTCAGGAAACTTAGTACTGTTGAATAACTCTAACAAGGCGGTTCTATGGCAGAGTTTTAATAATCCAACTGATACTCTTTTACCTGGAATGACAATCGGATACAATATCGACACGGGATACACTCTGTCACTGAAATCATGGACAAGCGCAGACGACCCTGCTATCGGGCCATATACTCTCCGATTTGATTCCGGCTCAGCGAGTCTAACTGTAAATAAAGGTTCTAATGTCTTCTGGATTGATGGTAATTCCAATTTATCTATTCAGTCTGTTTTCAACCGAGCAGGTTTGGGACAGGATGACTACAATGATCATTTCACTCTCCCGATTACTAGTAATTCTCGATTTGTACTGGAAGTGTCCGGGGATCTTAAATACGAAGATTGGTCAGAGAAATCCAAGCGTTGGCTTTCTCTCCAGTCGTCCAAGTGCGGAACAAACAATTCGTGCGGAGTATTTTCCATTTGTAATTCGCAGGACCGCGACCCTTGTCACTGTCTCAATGGTTTTGAACCGTTTGATGGTGATTCTTGGAGGAAAGGGAACAGATCAGCTGGATGTGTGAGGTTAAACAGCTTGTCCTGCGACACTACAGATGGATTTTTTCGGTTCGTTTCAGTGGAACTACCTCCAAATCATGCCAACCTGATGCTGGATTCTCTAGCAGAATGTAACCACACTTGCTTCACAGATTGTTCTTGTCTTGCTTTTGCTTACGATTTTGTCGCTGTTAACTGCATGTTGTGGAATGATCAAGTACTCACTCTGAAGAACATCTCAACTGATAATCAAGATGCTGATAAAAATAGACCAAATTTCTTTCTCAAACTTGCTGCCTCAGACATTCTTACCACAAGTAATGTAACAAATGCAGCTAGCAGACTTGGAAACAGGAAGAGGAATTTACTTCTAATTGTTATTTTGATACCATTTGTAATATTACTTATACTGCTTGGCTTATTCGTTTACCGAACAAGAAAGCAAAGTAAGAAAGGGGATGATTTGCTCAATTTTGAAGTAGGCATGAGCATGAAAGTTAATAAAGACTCTGACAAGGTTACAAAAGTTAAAAGGAAAGAAGTGAAATTACCATTATTCAGCTTTGTGAGTGTTTCAGCAGCAACGAATAACTTTGCAGACGCAAATAAACTCGGCGAAGGTGGCTTTGGACCTGTTTATAAGGGTATACTATTGAATGGGGATGAGGTTGCTGTAAAAAGGCTATCGAAAAGATCAGGTCAAGGATGGGAGGAGTTGCGAAACGAAGCCTTGTTGATTGCAAAACTCCAACATAATAATCTAGTTAGACTTCTTGGCTGCTGCATTGAGAGAGACGAAAAAATGCTTATTTATGAATTCATGGCCAATACAAGTTTGGATTGTTTTCTCTTCGGTTTGTACTTTTCAGACACAATTTTCTCCAATTATTTCATCCAAACTCTAGTTGTAACATCTTTTTGTGCAAAAACAGATGCAGAGAAAAGAGAGATGCTAGATTGGGGAACTCGGGTTCGAATAATTGATGGGATTGCGCAAGGACTCCTTTATCTGCATCAGTATTCTAGGTTCCGGATCATTCACCGAGATTTAAAAGCTAGCAACATTCTGTTAGACACCAACATGAATCCTAAAATATCAGATTTTGGAATGGCGAGGATATTCAGTGAGAATGTTCTTCAAGCAAATACGAACCGAATAGTTGGGACTTACGGCTACATGTCTCCTGAATATGCGATGGAAGGCATTTTCTCAATTAAGTCCGACGTGTTTAGCTTTGGAGTCCTTTTGTTAGAGATTATAAGTGGCAAGAAGAATACTGGTTTTTATCAAACAAATTCCTTCAGTCTTCTTGGATATGCTTGGGATCTATGGAGCAACAATTCTGGAATGGACTTGATTGATTCAAAAGTAGATGATATCTCCAACAAGGATTTAGTAATAAAATATGTGAATATAGGACTTCTGTGTGTACAACAAAGTCCAGAAGATAGGCCAACCATGTCTGATGTTGTCTCAATGATTGGCAATGACACTGCATCCCTTCCAAGTCCAAAGCCACCAGCATTTCAAAATGTGAGAGGTGTTGAAAGTTCAAGTCTCTCTAGAAGCACTGGAGAAAACATTTCTGTCAATGTTGTCACAAATTCAATAGTTGAAGCAAGATGA 2565 0.3965 MALASTFVSLAILLLLYCLNFFSVNANSYREFLQMGQSVRISDTVVSYGGNYELGFFTRDRDNSTKYYVGIWFKKVPKDKIVWVANRDYAFQTSSAFLTIQPDGNIAIRDGQMTYLVTNVPNNSYSNYATLLDSGNLVLLNNSNKAVLWQSFNNPTDTLLPGMTIGYNIDTGYTLSLKSWTSADDPAIGPYTLRFDSGSASLTVNKGSNVFWIDGNSNLSIQSVFNRAGLGQDDYNDHFTLPITSNSRFVLEVSGDLKYEDWSEKSKRWLSLQSSKCGTNNSCGVFSICNSQDRDPCHCLNGFEPFDGDSWRKGNRSAGCVRLNSLSCDTTDGFFRFVSVELPPNHANLMLDSLAECNHTCFTDCSCLAFAYDFVAVNCMLWNDQVLTLKNISTDNQDADKNRPNFFLKLAASDILTTSNVTNAASRLGNRKRNLLLIVILIPFVILLILLGLFVYRTRKQSKKGDDLLNFEVGMSMKVNKDSDKVTKVKRKEVKLPLFSFVSVSAATNNFADANKLGEGGFGPVYKGILLNGDEVAVKRLSKRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIERDEKMLIYEFMANTSLDCFLFGLYFSDTIFSNYFIQTLVVTSFCAKTDAEKREMLDWGTRVRIIDGIAQGLLYLHQYSRFRIIHRDLKASNILLDTNMNPKISDFGMARIFSENVLQANTNRIVGTYGYMSPEYAMEGIFSIKSDVFSFGVLLLEIISGKKNTGFYQTNSFSLLGYAWDLWSNNSGMDLIDSKVDDISNKDLVIKYVNIGLLCVQQSPEDRPTMSDVVSMIGNDTASLPSPKPPAFQNVRGVESSSLSRSTGENISVNVVTNSIVEAR* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5492 854 CDD STKc_IRAK 517 807 - -
Psa5g5492 854 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 624 852 - -
Psa5g5492 854 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 27 600 - -
Psa5g5492 854 CDD B_lectin 44 155 IPR001480 -
Psa5g5492 854 SUPERFAMILY Hairpin loop containing domain-like 331 391 - -
Psa5g5492 854 ProSiteProfiles PAN/Apple domain profile. 328 411 IPR003609 -
Psa5g5492 854 Pfam D-mannose binding lectin 81 180 IPR001480 -
Psa5g5492 854 SMART ntp_6 329 403 IPR003609 -
Psa5g5492 854 Pfam PAN-like domain 328 386 IPR003609 -
Psa5g5492 854 SMART blect_4 36 155 IPR001480 -
Psa5g5492 854 SUPERFAMILY Protein kinase-like (PK-like) 496 824 IPR011009 -
Psa5g5492 854 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Psa5g5492 854 Pfam Protein tyrosine and serine/threonine kinase 515 806 IPR001245 GO:0004672|GO:0006468
Psa5g5492 854 SMART serkin_6 511 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5492 854 Pfam Domain of unknown function (DUF3403) 809 854 IPR021820 GO:0004674
Psa5g5492 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672|GO:0006468
Psa5g5492 854 Gene3D Transferase(Phosphotransferase) domain 1 620 814 - -
Psa5g5492 854 ProSiteProfiles Protein kinase domain profile. 511 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5492 854 Gene3D - 25 153 IPR036426 -
Psa5g5492 854 Gene3D Phosphorylase Kinase; domain 1 471 586 - -
Psa5g5492 854 Pfam S-locus glycoprotein domain 244 305 IPR000858 GO:0048544
Psa5g5492 854 PIRSF SRK 2 854 IPR024171 GO:0004674
Psa5g5492 854 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 186 IPR036426 -
Psa5g5492 854 CDD PAN_AP_plant 326 411 - -
Psa5g5492 854 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 27 600 - -
Psa5g5492 854 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 624 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5492 Psa-Chr5 475793092 475797110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5492 436 822 Receptor kinase-like Gene Family AT4G23190 49.492 8.11e-120 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa5g5492 PK_Tyr_Ser-Thr 4.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5492 - - mtr:MTR_8g061110 1114.75